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| Mutant Information |
|---|
| Mutant Name | FN3474-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3474-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3467781 | C-T | HET | ||
| SBS | Chr1 | 37255132 | C-T | HET | ||
| SBS | Chr1 | 6753742 | G-A | HET | ||
| SBS | Chr10 | 13448247 | G-A | HET | ||
| SBS | Chr10 | 14052951 | G-T | HET | ||
| SBS | Chr10 | 20926445 | T-G | Homo | ||
| SBS | Chr11 | 24429893 | C-T | HET | STOP_GAINED | LOC_Os11g40820 |
| SBS | Chr11 | 7022497 | G-A | HET | ||
| SBS | Chr12 | 21194615 | C-T | Homo | ||
| SBS | Chr2 | 27325666 | G-A | HET | ||
| SBS | Chr2 | 31377612 | C-T | HET | ||
| SBS | Chr3 | 13559330 | C-T | HET | ||
| SBS | Chr3 | 19114031 | C-T | HET | ||
| SBS | Chr3 | 24530167 | T-A | Homo | ||
| SBS | Chr3 | 36335739 | G-C | HET | ||
| SBS | Chr4 | 21596092 | G-A | Homo | ||
| SBS | Chr4 | 6125961 | G-A | HET | ||
| SBS | Chr5 | 15245749 | A-T | HET | ||
| SBS | Chr5 | 15847286 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g27250 |
| SBS | Chr5 | 25355636 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g43600 |
| SBS | Chr5 | 3596776 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g06870 |
| SBS | Chr6 | 24891485 | G-T | HET | ||
| SBS | Chr6 | 8577757 | A-T | HET | ||
| SBS | Chr7 | 5092958 | A-G | HET | ||
| SBS | Chr8 | 11779658 | A-T | HET | ||
| SBS | Chr8 | 1791463 | G-T | HET | ||
| SBS | Chr8 | 7134503 | T-C | HET | ||
| SBS | Chr9 | 9458585 | G-A | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 4982566 | 4982581 | 15 | LOC_Os10g09220 |
| Deletion | Chr5 | 6036805 | 6036806 | 1 | LOC_Os05g10890 |
| Deletion | Chr2 | 14908013 | 14908015 | 2 | |
| Deletion | Chr3 | 15154969 | 15154977 | 8 | |
| Deletion | Chr7 | 15520478 | 15520482 | 4 | |
| Deletion | Chr9 | 15656143 | 15656144 | 1 | |
| Deletion | Chr7 | 16958599 | 16958608 | 9 | LOC_Os07g28920 |
| Deletion | Chr3 | 18202609 | 18202611 | 2 | |
| Deletion | Chr2 | 19875365 | 19875366 | 1 | |
| Deletion | Chr2 | 22189647 | 22189652 | 5 | |
| Deletion | Chr7 | 22997936 | 22997938 | 2 | |
| Deletion | Chr11 | 24105897 | 24105899 | 2 | |
| Deletion | Chr5 | 26649001 | 26757000 | 107999 | 15 |
| Deletion | Chr1 | 31348557 | 31348559 | 2 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 43134513 | 43134518 | 6 | |
| Insertion | Chr4 | 703349 | 703366 | 18 | 2 |
| Insertion | Chr4 | 703349 | 703378 | 30 | 2 |
| Insertion | Chr7 | 22054665 | 22054667 | 3 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 16687737 | 16816946 | LOC_Os05g28500 |
| Inversion | Chr5 | 16687740 | 16816950 | LOC_Os05g28500 |
| Inversion | Chr3 | 21864105 | 22405988 | |
| Inversion | Chr3 | 21864111 | 22623682 | |
| Inversion | Chr5 | 26243462 | 26640637 | LOC_Os05g45210 |
| Inversion | Chr5 | 26243479 | 26588250 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 15677351 | Chr2 | 22543264 | |
| Translocation | Chr5 | 15677354 | Chr2 | 22478577 | 2 |