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| Mutant Information |
|---|
| Mutant Name | FN3475-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3475-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 16
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26884869 | C-T | Homo | ||
| SBS | Chr11 | 13498829 | T-C | HET | ||
| SBS | Chr2 | 14835 | T-C | HET | ||
| SBS | Chr3 | 13621292 | C-T | HET | ||
| SBS | Chr4 | 35396906 | A-T | Homo | ||
| SBS | Chr5 | 18485807 | C-T | HET | ||
| SBS | Chr5 | 9457208 | G-T | Homo | ||
| SBS | Chr6 | 10361777 | C-T | HET | ||
| SBS | Chr6 | 15066005 | C-T | HET | ||
| SBS | Chr6 | 24116518 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g40480 |
| SBS | Chr7 | 22290806 | G-A | HET | ||
| SBS | Chr7 | 4132201 | G-A | HET | ||
| SBS | Chr8 | 13240939 | T-C | HET | ||
| SBS | Chr8 | 22503682 | T-A | HET | ||
| SBS | Chr8 | 6687125 | C-T | HET | ||
| SBS | Chr9 | 2033446 | T-G | HET |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 2900112 | 2900113 | 1 | |
| Deletion | Chr7 | 3307666 | 3307671 | 5 | LOC_Os07g06770 |
| Deletion | Chr7 | 5830571 | 5830576 | 5 | |
| Deletion | Chr4 | 7071480 | 7071481 | 1 | |
| Deletion | Chr8 | 8581859 | 8581866 | 7 | |
| Deletion | Chr10 | 10207411 | 10207436 | 25 | |
| Deletion | Chr5 | 11379970 | 11379976 | 6 | |
| Deletion | Chr2 | 13883863 | 13883877 | 14 | |
| Deletion | Chr1 | 14413001 | 14431000 | 17999 | LOC_Os01g25450 |
| Deletion | Chr4 | 19695001 | 19706000 | 10999 | LOC_Os04g32690 |
| Deletion | Chr6 | 20099987 | 20099996 | 9 | LOC_Os06g34560 |
| Deletion | Chr6 | 21508889 | 21508896 | 7 | |
| Deletion | Chr10 | 22335001 | 22362000 | 26999 | LOC_Os10g41560 |
| Deletion | Chr2 | 22415001 | 22426000 | 10999 | |
| Deletion | Chr10 | 22805317 | 22805320 | 3 | LOC_Os10g42364 |
| Deletion | Chr3 | 22921116 | 22921117 | 1 | |
| Deletion | Chr5 | 23391999 | 23392006 | 7 | |
| Deletion | Chr6 | 23799292 | 23799294 | 2 | |
| Deletion | Chr3 | 27491001 | 27500000 | 8999 | LOC_Os03g48300 |
| Deletion | Chr7 | 29115210 | 29115218 | 8 | |
| Deletion | Chr1 | 31045985 | 31045987 | 2 | |
| Deletion | Chr2 | 31455837 | 31455844 | 7 | |
| Deletion | Chr1 | 42980063 | 42980069 | 6 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 8642878 | 8642881 | 4 | |
| Insertion | Chr3 | 15138760 | 15138771 | 12 | LOC_Os03g26510 |
| Insertion | Chr7 | 9850587 | 9850587 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 5481498 | 5492165 | 2 |
| Inversion | Chr7 | 5481501 | 5492295 | 2 |
| Inversion | Chr4 | 17079973 | 17869576 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 5492268 | Chr2 | 197039 | LOC_Os07g10230 |
| Translocation | Chr11 | 18541473 | Chr2 | 196655 | |
| Translocation | Chr12 | 27434871 | Chr11 | 2433454 | 2 |
| Translocation | Chr12 | 27438852 | Chr7 | 5492267 | 2 |
| Translocation | Chr12 | 27438854 | Chr2 | 197678 |