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| Mutant Information |
|---|
| Mutant Name | FN3476-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3476-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1026147 | T-A | Homo | ||
| SBS | Chr1 | 1026148 | C-A | Homo | ||
| SBS | Chr1 | 18081609 | G-A | HET | ||
| SBS | Chr1 | 8131350 | T-A | HET | ||
| SBS | Chr10 | 3826222 | G-A | Homo | ||
| SBS | Chr10 | 7535030 | A-G | HET | ||
| SBS | Chr11 | 21184824 | A-G | HET | ||
| SBS | Chr11 | 22242884 | C-A | HET | ||
| SBS | Chr11 | 3384110 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g06900 |
| SBS | Chr11 | 496574 | C-T | Homo | ||
| SBS | Chr11 | 496575 | C-T | Homo | STOP_GAINED | LOC_Os11g01920 |
| SBS | Chr11 | 5295345 | A-T | Homo | ||
| SBS | Chr12 | 11175516 | C-A | HET | ||
| SBS | Chr2 | 11359731 | T-C | HET | ||
| SBS | Chr2 | 1459412 | T-C | Homo | ||
| SBS | Chr2 | 7245356 | A-T | HET | ||
| SBS | Chr3 | 16558364 | A-G | HET | ||
| SBS | Chr3 | 16870306 | C-T | Homo | ||
| SBS | Chr3 | 6971928 | T-A | Homo | ||
| SBS | Chr4 | 30851457 | G-A | Homo | ||
| SBS | Chr4 | 33556973 | C-A | Homo | ||
| SBS | Chr4 | 7685275 | T-G | HET | ||
| SBS | Chr4 | 8672136 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g15970 |
| SBS | Chr5 | 11548159 | C-G | Homo | ||
| SBS | Chr5 | 16940060 | T-C | Homo | ||
| SBS | Chr6 | 13226044 | A-G | Homo | ||
| SBS | Chr6 | 20046499 | T-C | HET | ||
| SBS | Chr6 | 8418341 | G-A | Homo | ||
| SBS | Chr7 | 14211433 | C-A | Homo |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 619262 | 619263 | 1 | |
| Deletion | Chr4 | 1009647 | 1009653 | 6 | |
| Deletion | Chr12 | 1747750 | 1747751 | 1 | |
| Deletion | Chr11 | 1942273 | 1942275 | 2 | |
| Deletion | Chr2 | 2146713 | 2146718 | 5 | |
| Deletion | Chr6 | 2190212 | 2190215 | 3 | |
| Deletion | Chr8 | 2923139 | 2923144 | 5 | |
| Deletion | Chr8 | 4993247 | 4993263 | 16 | |
| Deletion | Chr6 | 5254073 | 5254074 | 1 | LOC_Os06g10240 |
| Deletion | Chr11 | 5568540 | 5568543 | 3 | |
| Deletion | Chr10 | 7374494 | 7374504 | 10 | |
| Deletion | Chr5 | 11547816 | 11547827 | 11 | |
| Deletion | Chr7 | 13757417 | 13757440 | 23 | |
| Deletion | Chr8 | 15843001 | 15859000 | 15999 | 2 |
| Deletion | Chr8 | 15870001 | 15885000 | 14999 | 2 |
| Deletion | Chr5 | 15876407 | 15876411 | 4 | |
| Deletion | Chr2 | 21720185 | 21720186 | 1 | |
| Deletion | Chr7 | 26145275 | 26145276 | 1 | |
| Deletion | Chr2 | 28691231 | 28691236 | 5 | |
| Deletion | Chr3 | 34862231 | 34862235 | 4 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 20724460 | 20724461 | 2 | LOC_Os11g35350 |
| Insertion | Chr2 | 6425745 | 6425745 | 1 | |
| Insertion | Chr3 | 22759606 | 22759617 | 12 | |
| Insertion | Chr6 | 16223350 | 16223351 | 2 | |
| Insertion | Chr8 | 3350425 | 3350427 | 3 | |
| Insertion | Chr9 | 10238720 | 10238720 | 1 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 9914650 | Chr5 | 25980756 | LOC_Os08g16250 |
| Translocation | Chr6 | 24230479 | Chr4 | 12192981 | LOC_Os06g40650 |