Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	Homo
SBS	Chr1	13696275	G-C	HET
SBS	Chr1	30956652	G-A	HET
SBS	Chr1	39492334	G-C	HET
SBS	Chr1	6544063	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g12030
SBS	Chr10	665950	C-T	HET
SBS	Chr11	13470030	T-A	HET
SBS	Chr11	27322004	C-A	HET	STOP_GAINED	LOC_Os11g45130
SBS	Chr11	8480746	G-A	HET
SBS	Chr12	13586215	C-G	HET
SBS	Chr12	17108647	C-T	HET
SBS	Chr12	18932312	A-C	HET
SBS	Chr12	19171770	G-T	HET
SBS	Chr12	3550342	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g07220
SBS	Chr12	8865385	G-T	HET
SBS	Chr2	10168809	C-A	HET
SBS	Chr3	18521539	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g32380
SBS	Chr4	19609660	G-T	Homo
SBS	Chr4	2210177	T-C	HET
SBS	Chr5	15305393	G-A	Homo
SBS	Chr5	22669576	G-A	HET
SBS	Chr5	26922096	A-G	Homo
SBS	Chr5	5953513	T-A	HET
SBS	Chr6	21929151	G-A	Homo
SBS	Chr6	7797539	G-C	HET
SBS	Chr7	11954332	C-T	HET
SBS	Chr7	19203306	C-T	HET
SBS	Chr7	6868785	G-A	HET
SBS	Chr8	21682579	A-C	HET
SBS	Chr8	22982312	C-G	Homo
SBS	Chr8	7322311	C-G	Homo
SBS	Chr9	3750689	G-A	HET
SBS	Chr9	8690830	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14660

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2695437	2695441	4
Deletion	Chr2	4868568	4868569	1	LOC_Os02g09480
Deletion	Chr3	6005969	6005978	9
Deletion	Chr8	8256556	8256558	2
Deletion	Chr2	8715045	8715049	4
Deletion	Chr8	13881615	13881616	1
Deletion	Chr1	14414001	14432000	17999	LOC_Os01g25450
Deletion	Chr12	16931690	16931693	3
Deletion	Chr3	18558304	18558326	22
Deletion	Chr12	19138001	19162000	23999	5
Deletion	Chr8	19517765	19517774	9
Deletion	Chr5	20317223	20317224	1
Deletion	Chr3	20399869	20399870	1	LOC_Os03g36770
Deletion	Chr10	22340001	22362000	21999
Deletion	Chr4	22446348	22446354	6	LOC_Os04g37750
Deletion	Chr1	24822899	24822901	2
Deletion	Chr11	25189010	25189013	3
Deletion	Chr7	25704814	25704819	5
Deletion	Chr11	25804975	25804982	7
Deletion	Chr6	26791316	26791319	3
Deletion	Chr4	28227001	28241000	13999	LOC_Os04g47590
Deletion	Chr4	30751417	30751418	1	LOC_Os04g51860
Deletion	Chr3	31617399	31617400	1	LOC_Os03g55560
Deletion	Chr2	34903459	34903467	8

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15346254	15346329	76
Insertion	Chr10	5097313	5097313	1
Insertion	Chr2	28185138	28185138	1
Insertion	Chr8	11160608	11160608	1	LOC_Os08g18210

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	9840171	10266140	2
Inversion	Chr2	9840199	10266141	2
Inversion	Chr3	13458080	13459179	LOC_Os03g23250
Inversion	Chr3	13458083	13458604	LOC_Os03g23250

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	858411	Chr11	815201	2
Translocation	Chr9	10777998	Chr8	13659823
Translocation	Chr12	19163528	Chr3	16441530	LOC_Os12g31850
Translocation	Chr12	19163657	Chr3	16441546	LOC_Os12g31850
Translocation	Chr12	22799917	Chr4	18886094	LOC_Os12g37180

Main menu