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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17520922	C-A	HET
SBS	Chr1	25654374	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45210
SBS	Chr1	40849178	C-G	HET
SBS	Chr1	9785559	G-A	HET
SBS	Chr10	13474857	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26030
SBS	Chr10	13486323	G-T	HET
SBS	Chr10	14086453	G-T	HET
SBS	Chr10	2064914	T-A	HET
SBS	Chr10	4999740	G-A	HET
SBS	Chr11	11460374	C-T	Homo
SBS	Chr11	17722807	A-C	Homo
SBS	Chr11	26718397	G-A	HET
SBS	Chr12	23089165	A-G	HET
SBS	Chr12	5194413	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g09800
SBS	Chr12	8131743	A-C	HET
SBS	Chr12	8411404	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14699
SBS	Chr3	13916470	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g24430
SBS	Chr3	26752743	G-T	Homo
SBS	Chr3	8614500	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15610
SBS	Chr4	10775238	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g19360
SBS	Chr4	24801888	A-G	Homo
SBS	Chr4	27094241	C-A	Homo
SBS	Chr4	28320812	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g47730
SBS	Chr4	4144665	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07810
SBS	Chr6	12681131	G-A	HET
SBS	Chr6	1623854	T-C	HET
SBS	Chr6	24602452	A-G	HET
SBS	Chr6	27744153	A-T	Homo
SBS	Chr6	29025126	C-A	Homo
SBS	Chr6	29354866	A-T	Homo	STOP_GAINED	LOC_Os06g48520
SBS	Chr6	29354867	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g48520
SBS	Chr6	29354868	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g48520
SBS	Chr7	10440402	T-C	Homo
SBS	Chr8	18045086	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29430

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2830001	2874000	43999	7
Deletion	Chr7	7063953	7063970	17
Deletion	Chr9	7339645	7339655	10	LOC_Os09g12790
Deletion	Chr6	7607778	7607779	1
Deletion	Chr2	8430722	8430732	10
Deletion	Chr12	10497690	10497691	1
Deletion	Chr7	10543985	10544012	27
Deletion	Chr8	10746971	10746980	9
Deletion	Chr10	11067528	11067534	6
Deletion	Chr7	11136195	11136206	11
Deletion	Chr10	13646720	13646722	2	LOC_Os10g26320
Deletion	Chr8	17192637	17192638	1
Deletion	Chr1	22714001	22728000	13999	LOC_Os01g40250
Deletion	Chr6	24537399	24537400	1
Deletion	Chr6	25495452	25495475	23	LOC_Os06g42420
Deletion	Chr1	25933066	25933080	14
Deletion	Chr2	29706893	29706895	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	9033670	9033670	1	LOC_Os01g16050
Insertion	Chr10	1596388	1596390	3
Insertion	Chr3	1909278	1909279	2
Insertion	Chr6	11823715	11823715	1
Insertion	Chr9	4081073	4081073	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4283260	4395954	2
Inversion	Chr8	4738129	5419138	2
Inversion	Chr8	4738139	5419138	2
Inversion	Chr6	13329822	13672488	LOC_Os06g22850
Inversion	Chr6	13329826	13672500	LOC_Os06g22850
Inversion	Chr6	24199002	24213784	LOC_Os06g40590
Inversion	Chr6	24199005	24213784	LOC_Os06g40590

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	888362	Chr7	21020817	LOC_Os12g02570
Translocation	Chr4	6335793	Chr1	24632607
Translocation	Chr11	10569843	Chr9	7975560
Translocation	Chr11	11508165	Chr8	19974189	2
Translocation	Chr11	20126119	Chr3	8260847	LOC_Os11g34330

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