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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16899781	T-G	Homo
SBS	Chr1	22589105	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g40040
SBS	Chr10	10274929	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g20430
SBS	Chr10	18124939	C-T	Homo
SBS	Chr10	21435155	G-T	Homo
SBS	Chr10	5149521	C-T	Homo
SBS	Chr12	10011508	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g17480
SBS	Chr12	1720970	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g04110
SBS	Chr12	17273698	C-G	HET
SBS	Chr12	17675116	T-G	HET
SBS	Chr12	19660265	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g32580
SBS	Chr12	4142250	A-T	Homo
SBS	Chr2	10265271	G-A	HET
SBS	Chr2	9673188	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16960
SBS	Chr3	18871652	T-C	Homo
SBS	Chr3	23637182	T-A	Homo
SBS	Chr4	11924818	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g21180
SBS	Chr4	25579724	G-A	HET
SBS	Chr4	3940325	G-T	Homo
SBS	Chr4	6604058	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12030
SBS	Chr5	15028752	G-A	HET
SBS	Chr5	16043059	C-T	HET
SBS	Chr5	9992039	G-A	HET
SBS	Chr6	11378516	G-A	HET
SBS	Chr6	14740251	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25200
SBS	Chr6	16864895	C-T	HET
SBS	Chr6	19871696	A-G	HET
SBS	Chr6	30510439	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g50390
SBS	Chr7	10572269	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17860
SBS	Chr7	12887049	G-A	HET
SBS	Chr7	12890521	G-A	HET
SBS	Chr7	14554066	C-A	HET
SBS	Chr7	20343127	T-G	HET
SBS	Chr7	26958656	A-G	HET
SBS	Chr8	11649315	C-T	Homo
SBS	Chr8	26913251	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g42580
SBS	Chr9	20305980	C-T	HET
SBS	Chr9	3811403	G-A	HET

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	254308	254312	4
Deletion	Chr1	3923961	3923963	2
Deletion	Chr11	9175745	9175755	10
Deletion	Chr4	9283024	9283025	1	LOC_Os04g16950
Deletion	Chr11	10087226	10087241	15
Deletion	Chr10	11810001	11816000	5999	LOC_Os10g22730
Deletion	Chr9	11959861	11959862	1
Deletion	Chr10	13629305	13629317	12
Deletion	Chr1	14229275	14229281	6
Deletion	Chr11	15663684	15663685	1	LOC_Os11g27210
Deletion	Chr10	16420368	16420377	9
Deletion	Chr2	17340933	17340934	1
Deletion	Chr12	18042133	18042135	2
Deletion	Chr3	18638031	18638037	6
Deletion	Chr4	20162001	20162002	1
Deletion	Chr8	20733001	20741000	7999	2
Deletion	Chr7	21678501	21678506	5
Deletion	Chr7	22940001	22953000	12999	LOC_Os07g38260
Deletion	Chr1	24299525	24299538	13
Deletion	Chr8	26848372	26848374	2
Deletion	Chr6	30782310	30782318	8	LOC_Os06g50890
Deletion	Chr2	34372028	34372040	12

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	15228442	15228455	14	LOC_Os12g26140
Insertion	Chr12	19238688	19238689	2
Insertion	Chr3	17916094	17916123	30	LOC_Os03g31440
Insertion	Chr6	28719152	28719157	6	LOC_Os06g47380

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	26303112	26507437	LOC_Os12g42300
Inversion	Chr12	26303127	26507443	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	14577312	Chr5	12652418
Translocation	Chr6	19245947	Chr3	34344017	2
Translocation	Chr6	19246741	Chr3	34344018	2

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