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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12698015	T-A	Homo
SBS	Chr1	14984495	C-A	HET
SBS	Chr1	33670341	G-A	Homo
SBS	Chr1	41782164	G-T	HET
SBS	Chr10	11126341	G-C	HET
SBS	Chr10	13838472	T-C	HET
SBS	Chr10	14048058	T-A	HET
SBS	Chr10	16055884	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g30826
SBS	Chr10	20022067	C-G	HET
SBS	Chr11	15277381	G-A	HET
SBS	Chr11	22530669	A-G	Homo
SBS	Chr11	386927	A-T	HET
SBS	Chr12	11422699	C-T	Homo
SBS	Chr12	26835019	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g43230
SBS	Chr12	5606627	A-T	Homo
SBS	Chr2	1298553	G-A	Homo	SPLICE_SITE_ACCEPTOR	LOC_Os02g03240
SBS	Chr2	28951674	C-T	HET
SBS	Chr2	6509788	C-A	HET
SBS	Chr2	6718073	C-T	Homo
SBS	Chr3	14890437	C-T	HET
SBS	Chr3	30979550	G-A	Homo
SBS	Chr5	7214283	G-C	Homo
SBS	Chr6	10451223	T-A	Homo
SBS	Chr6	12794902	G-A	Homo
SBS	Chr6	16715773	C-A	Homo
SBS	Chr6	20744651	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g35550
SBS	Chr6	22932596	A-T	HET
SBS	Chr6	26997288	C-T	HET
SBS	Chr6	29838946	A-G	HET
SBS	Chr7	5238846	G-C	HET
SBS	Chr9	10017151	C-T	HET
SBS	Chr9	15903355	A-T	HET
SBS	Chr9	827420	A-T	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2562001	2618000	55999	6
Deletion	Chr4	5877483	5877494	11
Deletion	Chr1	12157001	12164000	6999	2
Deletion	Chr8	13377422	13377432	10
Deletion	Chr10	13942410	13942418	8	LOC_Os10g26710
Deletion	Chr8	14226001	14312000	85999	14
Deletion	Chr10	14317555	14317560	5
Deletion	Chr6	14852001	14950000	97999	18
Deletion	Chr11	15578811	15578822	11
Deletion	Chr11	18189981	18189982	1
Deletion	Chr11	18955302	18955304	2
Deletion	Chr11	19416594	19416598	4
Deletion	Chr2	23462995	23462996	1
Deletion	Chr8	24369310	24369311	1
Deletion	Chr5	28268926	28268927	1	LOC_Os05g49270
Deletion	Chr4	30207851	30207853	2
Deletion	Chr1	41987411	41987412	1	LOC_Os01g72390

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	4607934	4607937	4
Insertion	Chr4	13163660	13163663	4
Insertion	Chr5	6566158	6566159	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13896771	14115845	LOC_Os10g26630
Inversion	Chr10	15790060	15832886	LOC_Os10g30380
Inversion	Chr10	15790066	15832884	LOC_Os10g30380
Inversion	Chr10	17278011	17794660	2
Inversion	Chr10	17278026	17799485	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	13348683	Chr6	22360281	2
Translocation	Chr8	14276740	Chr3	15797329
Translocation	Chr8	14309555	Chr7	29433162	2
Translocation	Chr2	19802229	Chr1	33760538
Translocation	Chr7	29433163	Chr3	15796494	2
Translocation	Chr2	35731287	Chr1	9028814	2

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