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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27846954	T-A	Homo
SBS	Chr1	36245215	C-A	Homo
SBS	Chr1	40704325	T-C	HET
SBS	Chr10	4361944	T-G	HET
SBS	Chr11	1830031	A-G	HET
SBS	Chr11	24742101	A-G	HET
SBS	Chr11	26449066	C-T	HET
SBS	Chr12	15838660	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g27050
SBS	Chr12	5428751	A-T	HET
SBS	Chr12	947669	G-A	HET
SBS	Chr2	11385050	C-T	HET
SBS	Chr3	1838424	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	22564839	T-C	HET
SBS	Chr5	18808734	G-C	HET
SBS	Chr6	11418104	G-T	Homo
SBS	Chr6	23698637	G-A	HET
SBS	Chr6	23698638	G-A	HET
SBS	Chr6	27147204	G-A	HET
SBS	Chr7	18745419	G-T	Homo
SBS	Chr7	20426490	C-G	HET
SBS	Chr8	10776073	A-G	HET
SBS	Chr8	14002684	T-G	HET
SBS	Chr9	7755698	C-T	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	338001	370000	31999	LOC_Os01g01689
Deletion	Chr3	1589001	1600000	10999	LOC_Os03g03610
Deletion	Chr6	1613010	1613013	3
Deletion	Chr5	2772181	2772182	1
Deletion	Chr10	3460330	3460331	1	LOC_Os10g06670
Deletion	Chr6	4171001	4179000	7999	LOC_Os06g08480
Deletion	Chr10	8253274	8253275	1
Deletion	Chr12	9283758	9283760	2
Deletion	Chr8	12379727	12379750	23
Deletion	Chr9	12735585	12735591	6
Deletion	Chr6	13758001	13763000	4999	LOC_Os06g23600
Deletion	Chr5	14872667	14872672	5
Deletion	Chr10	15008272	15008273	1
Deletion	Chr9	20144001	20155000	10999	2
Deletion	Chr7	22339138	22339154	16
Deletion	Chr1	29651001	29667000	15999	2
Deletion	Chr2	29921226	29921244	18
Deletion	Chr3	30951386	30951389	3
Deletion	Chr1	39167089	39167093	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	17115290	17115290	1
Insertion	Chr8	12656502	12656502	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4485590	4485766
Inversion	Chr2	5542021	5542203
Inversion	Chr12	19180336	19859350
Inversion	Chr12	19180342	19865220
Inversion	Chr1	32312134	32737831	2
Inversion	Chr1	32312143	32737838	2

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1863213	Chr7	11426182
Translocation	Chr9	4757291	Chr5	5134646	2
Translocation	Chr8	5979870	Chr3	35071692
Translocation	Chr9	6204615	Chr1	23581018
Translocation	Chr5	7835947	Chr1	6206279
Translocation	Chr5	7835959	Chr1	6205684
Translocation	Chr4	7871961	Chr2	34491710
Translocation	Chr5	8522515	Chr2	23802575	2
Translocation	Chr11	13486695	Chr7	15104021	2
Translocation	Chr4	14105855	Chr3	34148283
Translocation	Chr10	18184179	Chr1	24311744
Translocation	Chr4	23565883	Chr1	23675315	2
Translocation	Chr4	27643801	Chr1	28670324	2

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