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Mutant Information |
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Mutant Name | FN3482-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3482-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 23
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 27846954 | T-A | Homo | ||
SBS | Chr1 | 36245215 | C-A | Homo | ||
SBS | Chr1 | 40704325 | T-C | HET | ||
SBS | Chr2 | 11385050 | C-T | HET | ||
SBS | Chr3 | 1838424 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g04030 |
SBS | Chr3 | 22564839 | T-C | HET | ||
SBS | Chr5 | 18808734 | G-C | HET | ||
SBS | Chr6 | 11418104 | G-T | Homo | ||
SBS | Chr6 | 23698637 | G-A | HET | ||
SBS | Chr6 | 23698638 | G-A | HET | ||
SBS | Chr6 | 27147204 | G-A | HET | ||
SBS | Chr7 | 18745419 | G-T | Homo | ||
SBS | Chr7 | 20426490 | C-G | HET | ||
SBS | Chr8 | 10776073 | A-G | HET | ||
SBS | Chr8 | 14002684 | T-G | HET | ||
SBS | Chr9 | 7755698 | C-T | HET | ||
SBS | Chr10 | 4361944 | T-G | HET | ||
SBS | Chr11 | 1830031 | A-G | HET | ||
SBS | Chr11 | 24742101 | A-G | HET | ||
SBS | Chr11 | 26449066 | C-T | HET | ||
SBS | Chr12 | 947669 | G-A | HET | ||
SBS | Chr12 | 5428751 | A-T | HET | ||
SBS | Chr12 | 15838660 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g27050 |
Deletions: 19
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr1 | 338001 | 370000 | 31999 | LOC_Os01g01689 |
Deletion | Chr3 | 1589001 | 1600000 | 10999 | LOC_Os03g03610 |
Deletion | Chr6 | 1613010 | 1613013 | 3 | |
Deletion | Chr5 | 2772181 | 2772182 | 1 | |
Deletion | Chr10 | 3460330 | 3460331 | 1 | LOC_Os10g06670 |
Deletion | Chr6 | 4171001 | 4179000 | 7999 | LOC_Os06g08480 |
Deletion | Chr10 | 8253274 | 8253275 | 1 | |
Deletion | Chr12 | 9283758 | 9283760 | 2 | |
Deletion | Chr8 | 12379727 | 12379750 | 23 | |
Deletion | Chr9 | 12735585 | 12735591 | 6 | |
Deletion | Chr6 | 13758001 | 13763000 | 4999 | LOC_Os06g23600 |
Deletion | Chr5 | 14872667 | 14872672 | 5 | |
Deletion | Chr10 | 15008272 | 15008273 | 1 | |
Deletion | Chr9 | 20144001 | 20155000 | 10999 | 2 |
Deletion | Chr7 | 22339138 | 22339154 | 16 | |
Deletion | Chr1 | 29651001 | 29667000 | 15999 | 2 |
Deletion | Chr2 | 29921226 | 29921244 | 18 | |
Deletion | Chr3 | 30951386 | 30951389 | 3 | |
Deletion | Chr1 | 39167089 | 39167093 | 4 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr8 | 12656502 | 12656502 | 1 | |
Insertion | Chr12 | 17115290 | 17115290 | 1 |
Inversions: 6
Translocations: 13
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 1863213 | Chr7 | 11426182 | |
Translocation | Chr9 | 4757291 | Chr5 | 5134646 | 2 |
Translocation | Chr8 | 5979870 | Chr3 | 35071692 | |
Translocation | Chr9 | 6204615 | Chr1 | 23581018 | |
Translocation | Chr5 | 7835947 | Chr1 | 6206279 | |
Translocation | Chr5 | 7835959 | Chr1 | 6205684 | |
Translocation | Chr4 | 7871961 | Chr2 | 34491710 | |
Translocation | Chr5 | 8522515 | Chr2 | 23802575 | 2 |
Translocation | Chr11 | 13486695 | Chr7 | 15104021 | 2 |
Translocation | Chr4 | 14105855 | Chr3 | 34148283 | |
Translocation | Chr10 | 18184179 | Chr1 | 24311744 | |
Translocation | Chr4 | 23565883 | Chr1 | 23675315 | 2 |
Translocation | Chr4 | 27643801 | Chr1 | 28670324 | 2 |