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| Mutant Information |
|---|
| Mutant Name | FN3485-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3485-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2351323 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g04990 |
| SBS | Chr1 | 40698341 | T-A | Homo | ||
| SBS | Chr10 | 18663614 | G-A | Homo | ||
| SBS | Chr10 | 9106286 | G-A | HET | ||
| SBS | Chr11 | 11139691 | A-T | Homo | ||
| SBS | Chr11 | 11139692 | G-T | Homo | ||
| SBS | Chr11 | 2271294 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g05160 |
| SBS | Chr11 | 2271295 | G-T | HET | STOP_GAINED | LOC_Os11g05160 |
| SBS | Chr12 | 12659043 | G-C | Homo | ||
| SBS | Chr12 | 25104465 | G-A | Homo | ||
| SBS | Chr12 | 26426792 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g42550 |
| SBS | Chr12 | 27521655 | A-G | Homo | ||
| SBS | Chr12 | 3789211 | G-A | Homo | ||
| SBS | Chr12 | 8223170 | G-A | HET | ||
| SBS | Chr2 | 8060733 | A-T | HET | ||
| SBS | Chr3 | 10591478 | G-T | HET | ||
| SBS | Chr3 | 31325618 | C-A | HET | ||
| SBS | Chr4 | 6766460 | T-C | Homo | ||
| SBS | Chr6 | 11162251 | G-A | HET | ||
| SBS | Chr6 | 20155724 | A-G | HET | ||
| SBS | Chr7 | 14378596 | C-T | HET | ||
| SBS | Chr7 | 1527708 | G-T | Homo | ||
| SBS | Chr7 | 1527709 | T-A | Homo | ||
| SBS | Chr7 | 28482643 | G-A | Homo | ||
| SBS | Chr8 | 19683360 | G-A | Homo | ||
| SBS | Chr8 | 19683363 | G-A | Homo | ||
| SBS | Chr9 | 13071575 | G-A | HET |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 398661 | 398665 | 4 | |
| Deletion | Chr5 | 905658 | 905659 | 1 | |
| Deletion | Chr11 | 1091729 | 1091740 | 11 | |
| Deletion | Chr7 | 2060327 | 2060338 | 11 | |
| Deletion | Chr11 | 4111950 | 4111955 | 5 | |
| Deletion | Chr3 | 7941712 | 7941713 | 1 | |
| Deletion | Chr5 | 11277634 | 11277635 | 1 | |
| Deletion | Chr10 | 11428929 | 11428931 | 2 | LOC_Os10g22130 |
| Deletion | Chr7 | 12715919 | 12715920 | 1 | |
| Deletion | Chr6 | 17576606 | 17576611 | 5 | |
| Deletion | Chr5 | 18832269 | 18832271 | 2 | |
| Deletion | Chr6 | 19435484 | 19435486 | 2 | LOC_Os06g33360 |
| Deletion | Chr12 | 20181971 | 20181973 | 2 | LOC_Os12g33370 |
| Deletion | Chr7 | 24667564 | 24667581 | 17 | LOC_Os07g41200 |
| Deletion | Chr1 | 25845975 | 25845980 | 5 | |
| Deletion | Chr12 | 26401839 | 26401852 | 13 | |
| Deletion | Chr8 | 28117220 | 28117222 | 2 | |
| Deletion | Chr1 | 28179367 | 28179370 | 3 | |
| Deletion | Chr7 | 28482621 | 28482630 | 9 | |
| Deletion | Chr7 | 28501505 | 28501506 | 1 | |
| Deletion | Chr1 | 43246914 | 43246915 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 22889740 | 22889776 | 37 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 4511533 | 4905023 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 6584179 | Chr5 | 27477153 | 2 |
| Translocation | Chr7 | 6584191 | Chr5 | 27331487 | |
| Translocation | Chr10 | 15557603 | Chr4 | 15030591 | |
| Translocation | Chr8 | 25853950 | Chr1 | 41351273 | 2 |