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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	977768	A-G	HET
SBS	Chr1	24290469	C-T	HET
SBS	Chr1	24352065	C-T	HET
SBS	Chr1	34470944	G-A	Homo
SBS	Chr2	11519308	T-A	HET
SBS	Chr2	11521405	T-C	HET
SBS	Chr2	12691714	C-A	HET
SBS	Chr2	22835843	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g37834
SBS	Chr2	23673120	A-G	HET
SBS	Chr3	4467224	C-T	Homo
SBS	Chr3	6828208	G-T	HET
SBS	Chr3	22239683	G-A	HET
SBS	Chr4	6876332	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g12440
SBS	Chr4	6876333	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g12440
SBS	Chr4	13434609	G-A	HET
SBS	Chr5	13969411	C-A	HET
SBS	Chr5	24667331	A-T	HET
SBS	Chr6	17765128	A-T	HET
SBS	Chr6	26030455	G-A	HET
SBS	Chr6	27397280	A-T	HET
SBS	Chr7	16536956	A-T	HET
SBS	Chr7	22571632	C-T	HET
SBS	Chr8	26194332	T-A	HET
SBS	Chr9	17270684	G-T	HET
SBS	Chr9	20326937	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g34880
SBS	Chr10	2482788	A-C	HET
SBS	Chr10	11743244	G-A	HET
SBS	Chr10	20945077	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39230
SBS	Chr12	12619680	A-G	Homo
SBS	Chr12	12632594	G-A	Homo
SBS	Chr12	21935720	G-A	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	248874	248881	7
Deletion	Chr5	3343419	3343447	28
Deletion	Chr4	4711997	4712004	7
Deletion	Chr2	8522001	8530000	7999	LOC_Os02g15260
Deletion	Chr4	8957719	8957729	10
Deletion	Chr5	9327422	9327426	4	LOC_Os05g16430
Deletion	Chr10	9487731	9487732	1	LOC_Os10g18670
Deletion	Chr1	14423001	14431000	7999	LOC_Os01g25450
Deletion	Chr5	18550844	18550849	5
Deletion	Chr4	18590514	18590536	22
Deletion	Chr4	19096837	19096838	1
Deletion	Chr2	22418001	22427000	8999	LOC_Os02g37090
Deletion	Chr4	24442186	24442203	17
Deletion	Chr3	24826001	24885000	58999	11
Deletion	Chr3	24893001	24920000	26999	4
Deletion	Chr4	25036632	25036634	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	7257637	7257638	2
Insertion	Chr12	1077943	1077944	2
Insertion	Chr2	31383990	31384013	24
Insertion	Chr5	21807624	21807624	1	LOC_Os05g37270
Insertion	Chr6	1060077	1060097	21	LOC_Os06g02880

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1432283	1538669	LOC_Os04g03340
Inversion	Chr4	1432296	1538720	LOC_Os04g03340
Inversion	Chr2	17677148	17684142	2
Inversion	Chr7	24830311	25038888

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	1827363	Chr1	42677359	2
Translocation	Chr3	2540570	Chr1	41889288	2
Translocation	Chr3	2540588	Chr1	41908947
Translocation	Chr9	9357599	Chr6	29946116	2
Translocation	Chr7	13207342	Chr4	1840464
Translocation	Chr7	13207347	Chr1	42663097
Translocation	Chr2	15716252	Chr1	42677367	2
Translocation	Chr12	16719728	Chr6	13458650
Translocation	Chr10	17213157	Chr6	27934763	2
Translocation	Chr7	21724833	Chr1	42678607	LOC_Os07g36330
Translocation	Chr7	21725315	Chr2	15716246	2
Translocation	Chr7	24830309	Chr2	12679650
Translocation	Chr7	25037528	Chr1	17277441	LOC_Os07g41790
Translocation	Chr7	25038885	Chr3	25058606

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