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| Mutant Information |
|---|
| Mutant Name | FN3488-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3488-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14344109 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g25386 |
| SBS | Chr1 | 25094315 | G-A | HET | STOP_GAINED | LOC_Os01g43790 |
| SBS | Chr1 | 42385370 | G-A | HET | ||
| SBS | Chr1 | 6590181 | T-C | HET | ||
| SBS | Chr10 | 2994073 | G-C | HET | ||
| SBS | Chr10 | 4603517 | C-G | HET | ||
| SBS | Chr10 | 6525646 | C-A | HET | ||
| SBS | Chr11 | 10365954 | G-T | Homo | ||
| SBS | Chr3 | 27965872 | G-A | Homo | ||
| SBS | Chr3 | 28291214 | G-A | Homo | ||
| SBS | Chr4 | 12687985 | C-G | HET | ||
| SBS | Chr4 | 1605980 | G-A | HET | ||
| SBS | Chr4 | 21965619 | C-T | Homo | ||
| SBS | Chr4 | 21965620 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g36020 |
| SBS | Chr4 | 35418577 | G-A | HET | ||
| SBS | Chr5 | 13021605 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g22910 |
| SBS | Chr5 | 26021126 | T-C | HET | ||
| SBS | Chr6 | 12318935 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g21330 |
| SBS | Chr7 | 18984209 | A-T | Homo | ||
| SBS | Chr7 | 26489004 | C-T | Homo | ||
| SBS | Chr7 | 27768414 | A-G | HET | ||
| SBS | Chr8 | 5578749 | T-C | Homo | ||
| SBS | Chr8 | 6492025 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g11020 |
| SBS | Chr9 | 8482309 | G-A | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 377960 | 377961 | 1 | |
| Deletion | Chr4 | 5406611 | 5406612 | 1 | |
| Deletion | Chr8 | 8875918 | 8875919 | 1 | |
| Deletion | Chr8 | 18367352 | 18367363 | 11 | LOC_Os08g29880 |
| Deletion | Chr5 | 19952241 | 19952250 | 9 | |
| Deletion | Chr8 | 21708335 | 21708345 | 10 | |
| Deletion | Chr6 | 23101963 | 23101965 | 2 | |
| Deletion | Chr6 | 25755622 | 25755623 | 1 | LOC_Os06g42860 |
| Deletion | Chr4 | 27674734 | 27674737 | 3 | |
| Deletion | Chr2 | 30944039 | 30944040 | 1 | LOC_Os02g50660 |
| Deletion | Chr1 | 41249001 | 41269000 | 19999 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 1509542 | 1509544 | 3 | |
| Insertion | Chr3 | 13386871 | 13386871 | 1 | |
| Insertion | Chr6 | 21857776 | 21857777 | 2 |
Inversions: 6
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 84922 | Chr6 | 22815088 | |
| Translocation | Chr6 | 9190554 | Chr3 | 2887281 | 2 |
| Translocation | Chr10 | 12733169 | Chr4 | 504407 | 2 |
| Translocation | Chr12 | 16938355 | Chr11 | 675781 | LOC_Os12g28650 |
| Translocation | Chr6 | 19269340 | Chr5 | 8522459 | |
| Translocation | Chr12 | 20276073 | Chr7 | 15549938 | |
| Translocation | Chr12 | 22022332 | Chr4 | 15487748 |