Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20561857	A-G	HET
SBS	Chr1	42922737	C-A	Homo
SBS	Chr10	13628910	G-A	HET
SBS	Chr10	15824395	T-A	HET
SBS	Chr11	10866328	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19060
SBS	Chr11	17792943	C-A	HET
SBS	Chr11	17792944	G-T	HET
SBS	Chr11	8050944	C-T	HET
SBS	Chr12	18076931	G-T	HET
SBS	Chr2	24162637	C-T	Homo
SBS	Chr2	28371278	C-A	Homo
SBS	Chr3	1060504	T-A	HET
SBS	Chr3	14098540	A-T	HET
SBS	Chr3	17565633	A-T	Homo
SBS	Chr3	17565635	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g30810
SBS	Chr3	24005327	G-T	HET
SBS	Chr4	17676636	G-A	HET
SBS	Chr4	8368211	C-T	HET
SBS	Chr5	14341708	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g24740
SBS	Chr5	14709396	A-G	HET
SBS	Chr5	15370221	C-T	HET
SBS	Chr5	9914183	G-A	HET
SBS	Chr6	22169773	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g37480
SBS	Chr7	27995645	T-A	Homo
SBS	Chr8	9560509	C-T	HET
SBS	Chr9	2177354	C-T	HET
SBS	Chr9	3403383	C-T	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2413285	2413286	1
Deletion	Chr2	2948855	2948856	1
Deletion	Chr12	3268243	3268245	2	LOC_Os12g06710
Deletion	Chr10	3370352	3370354	2
Deletion	Chr3	4407461	4407463	2	LOC_Os03g08560
Deletion	Chr2	4514577	4514612	35
Deletion	Chr12	4906468	4906472	4
Deletion	Chr8	6930686	6930690	4	LOC_Os08g11810
Deletion	Chr11	8971001	9115000	143999	20
Deletion	Chr7	12287424	12287429	5
Deletion	Chr12	12444643	12444654	11
Deletion	Chr1	18127132	18127140	8	LOC_Os01g33000
Deletion	Chr4	19759308	19759319	11
Deletion	Chr6	24164521	24164533	12
Deletion	Chr3	31724163	31724177	14

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	26788921	26788922	2
Insertion	Chr2	27035260	27035263	4
Insertion	Chr4	14896425	14896425	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5127700	5149918	2
Inversion	Chr6	17679196	17873834	2
Inversion	Chr6	17679208	17873835	2
Inversion	Chr2	23221526	23222659
Inversion	Chr2	23221536	23222664
Inversion	Chr3	24274696	24424083	LOC_Os03g43510
Inversion	Chr3	24274705	24424089	LOC_Os03g43510
Inversion	Chr1	32969628	33071825	LOC_Os01g57073

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	8921245	Chr3	24398634
Translocation	Chr9	22821460	Chr8	10066089
Translocation	Chr11	28408253	Chr4	18149507	LOC_Os11g47240
Translocation	Chr11	29010103	Chr3	31102232

Main menu