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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17375625	A-G	HET
SBS	Chr1	19432460	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35090
SBS	Chr1	493874	G-A	HET
SBS	Chr10	4879100	A-G	HET
SBS	Chr10	6033445	C-T	HET
SBS	Chr10	6129773	C-T	HET
SBS	Chr11	11179822	G-A	Homo
SBS	Chr11	15265546	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26650
SBS	Chr11	17882344	C-T	Homo
SBS	Chr11	21119020	T-C	Homo
SBS	Chr11	4465843	G-A	Homo
SBS	Chr11	4465844	A-G	Homo
SBS	Chr12	15395462	C-T	HET
SBS	Chr12	23572256	C-A	HET
SBS	Chr12	2924389	G-A	HET
SBS	Chr2	25444271	G-C	HET
SBS	Chr2	25979800	C-T	HET
SBS	Chr2	26392004	C-T	HET
SBS	Chr2	27609089	G-A	HET
SBS	Chr2	3036117	C-T	HET
SBS	Chr2	35469735	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g57930
SBS	Chr3	8869691	A-G	HET
SBS	Chr4	13784228	T-G	Homo
SBS	Chr4	1842309	T-C	HET
SBS	Chr4	5167487	G-A	HET
SBS	Chr5	29189730	G-A	HET
SBS	Chr6	1733998	G-A	HET
SBS	Chr7	11270009	G-A	HET
SBS	Chr7	18226425	G-A	Homo
SBS	Chr7	28206307	C-G	HET
SBS	Chr8	5050326	T-G	HET
SBS	Chr9	18818133	A-T	HET
SBS	Chr9	8362256	G-A	Homo

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2509654	2509667	13
Deletion	Chr11	3200577	3200578	1
Deletion	Chr2	3220850	3220856	6
Deletion	Chr7	3439158	3439167	9
Deletion	Chr7	7483393	7483402	9
Deletion	Chr4	8235182	8235184	2
Deletion	Chr1	8563001	8589000	25999	5
Deletion	Chr10	9108144	9108155	11
Deletion	Chr12	9644032	9644038	6
Deletion	Chr12	10125001	10157000	31999	5
Deletion	Chr1	12211401	12211411	10
Deletion	Chr5	16165126	16165127	1
Deletion	Chr9	21124249	21124250	1
Deletion	Chr1	22911149	22911150	1
Deletion	Chr5	22946673	22946680	7	LOC_Os05g39130
Deletion	Chr2	25921001	25976000	54999	9
Deletion	Chr12	26825569	26825570	1
Deletion	Chr3	27813417	27813431	14

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	33083050	33083097	48	LOC_Os01g57250
Insertion	Chr12	10166845	10166845	1
Insertion	Chr12	23979751	23979751	1
Insertion	Chr2	9034220	9034246	27
Insertion	Chr6	9639783	9639826	44

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5038701	5040825	LOC_Os05g09070
Inversion	Chr5	23398621	24261036	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8941257	Chr1	30237136
Translocation	Chr12	10124526	Chr5	15077337
Translocation	Chr12	10126224	Chr5	15077349
Translocation	Chr8	12191297	Chr3	21958891	LOC_Os08g20300
Translocation	Chr3	15969751	Chr1	27384163	LOC_Os03g27830
Translocation	Chr3	31068312	Chr1	16252172

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