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| Mutant Information |
|---|
| Mutant Name | FN3500-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3500-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2258080 | C-T | HET | ||
| SBS | Chr1 | 26648096 | T-A | Homo | ||
| SBS | Chr1 | 26648097 | G-A | Homo | ||
| SBS | Chr1 | 26648098 | G-A | Homo | ||
| SBS | Chr1 | 28508715 | T-A | Homo | ||
| SBS | Chr1 | 30205386 | T-G | HET | ||
| SBS | Chr1 | 35235124 | T-G | HET | ||
| SBS | Chr10 | 15065122 | C-T | HET | ||
| SBS | Chr10 | 2999077 | T-C | HET | ||
| SBS | Chr10 | 3023854 | C-A | HET | ||
| SBS | Chr10 | 7931804 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g15130 |
| SBS | Chr11 | 11518113 | C-G | HET | ||
| SBS | Chr11 | 25711922 | G-T | Homo | ||
| SBS | Chr11 | 9338169 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g16820 |
| SBS | Chr12 | 2307137 | C-A | HET | ||
| SBS | Chr12 | 3179481 | C-T | HET | ||
| SBS | Chr2 | 24906512 | C-T | HET | ||
| SBS | Chr2 | 31285001 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g51130 |
| SBS | Chr2 | 34282939 | C-T | Homo | ||
| SBS | Chr2 | 5504339 | A-T | HET | ||
| SBS | Chr3 | 22603797 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g40650 |
| SBS | Chr3 | 34461891 | C-G | Homo | ||
| SBS | Chr3 | 5804357 | T-C | HET | ||
| SBS | Chr4 | 30312853 | A-G | HET | ||
| SBS | Chr5 | 28348458 | G-A | Homo | ||
| SBS | Chr5 | 28971883 | C-T | HET | ||
| SBS | Chr5 | 29000772 | C-T | Homo | ||
| SBS | Chr6 | 15257373 | C-T | HET | ||
| SBS | Chr6 | 23144007 | C-A | HET | ||
| SBS | Chr6 | 5319115 | G-A | HET | ||
| SBS | Chr6 | 7897050 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g14160 |
| SBS | Chr7 | 11084908 | A-C | Homo | ||
| SBS | Chr7 | 22716769 | A-T | HET | ||
| SBS | Chr8 | 272053 | T-A | HET | ||
| SBS | Chr8 | 7876885 | C-T | HET | ||
| SBS | Chr9 | 22637213 | T-C | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 257135 | 257136 | 1 | LOC_Os05g01444 |
| Deletion | Chr1 | 7421750 | 7421754 | 4 | LOC_Os01g13300 |
| Deletion | Chr7 | 9597295 | 9597333 | 38 | LOC_Os07g16400 |
| Deletion | Chr5 | 10658557 | 10658560 | 3 | |
| Deletion | Chr1 | 12034898 | 12034904 | 6 | |
| Deletion | Chr3 | 12416001 | 12468000 | 51999 | 8 |
| Deletion | Chr2 | 13127978 | 13127979 | 1 | |
| Deletion | Chr12 | 15425789 | 15425790 | 1 | LOC_Os12g26400 |
| Deletion | Chr6 | 15958268 | 15958269 | 1 | LOC_Os06g28100 |
| Deletion | Chr3 | 16956371 | 16956450 | 79 | |
| Deletion | Chr4 | 17055849 | 17055853 | 4 | |
| Deletion | Chr9 | 21263545 | 21263549 | 4 | |
| Deletion | Chr8 | 24369189 | 24369193 | 4 | |
| Deletion | Chr12 | 26423568 | 26423574 | 6 | |
| Deletion | Chr3 | 32277584 | 32277590 | 6 | |
| Deletion | Chr1 | 34612197 | 34612201 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 8996999 | 8996999 | 1 | |
| Insertion | Chr8 | 5733618 | 5733618 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 9920877 | 9921237 | LOC_Os01g17250 |
| Inversion | Chr1 | 27805767 | 28219143 | 2 |
| Inversion | Chr4 | 29500813 | 29997541 | LOC_Os04g49440 |
| Inversion | Chr4 | 29500827 | 29997544 | LOC_Os04g49440 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 8376265 | Chr3 | 25764651 | LOC_Os12g14650 |