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| Mutant Information |
|---|
| Mutant Name | FN3501-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3501-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 39835803 | A-G | HET | ||
| SBS | Chr1 | 40257617 | G-A | HET | ||
| SBS | Chr10 | 19304573 | C-A | HET | ||
| SBS | Chr10 | 893596 | C-T | HET | ||
| SBS | Chr11 | 11642319 | G-A | HET | STOP_GAINED | LOC_Os11g20150 |
| SBS | Chr11 | 27649405 | A-G | Homo | ||
| SBS | Chr12 | 13851771 | G-A | HET | ||
| SBS | Chr12 | 14386291 | C-A | Homo | ||
| SBS | Chr12 | 3788225 | G-A | Homo | ||
| SBS | Chr2 | 18606584 | T-A | HET | ||
| SBS | Chr2 | 2447803 | A-C | HET | ||
| SBS | Chr2 | 29279455 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g47860 |
| SBS | Chr2 | 30365868 | A-C | HET | ||
| SBS | Chr3 | 18030302 | C-A | Homo | ||
| SBS | Chr3 | 23123639 | G-A | Homo | ||
| SBS | Chr3 | 28043010 | G-A | Homo | ||
| SBS | Chr3 | 31669500 | G-A | HET | ||
| SBS | Chr6 | 20063285 | C-A | HET | ||
| SBS | Chr7 | 25322290 | G-A | Homo | ||
| SBS | Chr8 | 12324413 | C-T | Homo | ||
| SBS | Chr8 | 12564153 | T-A | HET | ||
| SBS | Chr8 | 15835461 | C-A | HET | ||
| SBS | Chr9 | 14098477 | A-G | Homo |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1220827 | 1220828 | 1 | LOC_Os10g02960 |
| Deletion | Chr7 | 14059252 | 14059254 | 2 | |
| Deletion | Chr1 | 18859921 | 18859923 | 2 | |
| Deletion | Chr5 | 19693507 | 19693828 | 321 | |
| Deletion | Chr8 | 22345607 | 22345608 | 1 | |
| Deletion | Chr6 | 24164521 | 24164533 | 12 | |
| Deletion | Chr11 | 27667956 | 27667960 | 4 | |
| Deletion | Chr4 | 28169394 | 28169399 | 5 | |
| Deletion | Chr1 | 31333768 | 31333770 | 2 | LOC_Os01g54480 |
Insertions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 19903881 | 19903882 | 2 | |
| Insertion | Chr10 | 3255591 | 3255591 | 1 | |
| Insertion | Chr12 | 22349029 | 22349029 | 1 | |
| Insertion | Chr12 | 4240891 | 4240891 | 1 | |
| Insertion | Chr2 | 12409837 | 12409845 | 9 | |
| Insertion | Chr4 | 12162934 | 12162934 | 1 | |
| Insertion | Chr6 | 17523889 | 17523892 | 4 | LOC_Os06g30340 |
| Insertion | Chr7 | 11926154 | 11926154 | 1 | |
| Insertion | Chr7 | 28467178 | 28467179 | 2 | |
| Insertion | Chr8 | 1158721 | 1158733 | 13 | |
| Insertion | Chr9 | 2883054 | 2883054 | 1 | LOC_Os09g06150 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 18033506 | 18260801 | LOC_Os03g31594 |
| Inversion | Chr4 | 19311294 | 19577554 | |
| Inversion | Chr4 | 19311295 | 19577558 |
Translocations: 12
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 6822542 | Chr4 | 27350911 | |
| Translocation | Chr9 | 9357365 | Chr6 | 29946007 | 2 |
| Translocation | Chr8 | 11049873 | Chr2 | 33015485 | LOC_Os08g18000 |
| Translocation | Chr6 | 11389238 | Chr2 | 32367143 | LOC_Os06g19900 |
| Translocation | Chr6 | 11418533 | Chr2 | 32367928 | LOC_Os06g19940 |
| Translocation | Chr10 | 12025660 | Chr9 | 9357191 | |
| Translocation | Chr12 | 12920267 | Chr7 | 11679979 | 2 |
| Translocation | Chr4 | 13036348 | Chr3 | 25422753 | 2 |
| Translocation | Chr11 | 18175770 | Chr2 | 18602801 | |
| Translocation | Chr11 | 18175856 | Chr2 | 18603962 | |
| Translocation | Chr12 | 21257844 | Chr10 | 16395158 | |
| Translocation | Chr7 | 29348830 | Chr4 | 12000 | LOC_Os07g49010 |