Search Results
| Mutant Information |
|---|
| Mutant Name | FN3505-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3505-S Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8244365 | G-T | HET | ||
| SBS | Chr2 | 16088791 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g27310 |
| SBS | Chr2 | 17035029 | A-T | Homo | ||
| SBS | Chr2 | 21572300 | T-G | Homo | ||
| SBS | Chr2 | 26164165 | T-C | Homo | ||
| SBS | Chr3 | 3288787 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g06530 |
| SBS | Chr3 | 3332049 | T-C | HET | ||
| SBS | Chr3 | 3441661 | T-C | HET | ||
| SBS | Chr3 | 14769912 | C-T | Homo | ||
| SBS | Chr3 | 22846569 | G-A | HET | ||
| SBS | Chr3 | 23552634 | C-T | HET | ||
| SBS | Chr3 | 34338625 | A-C | Homo | ||
| SBS | Chr4 | 27768898 | C-T | HET | ||
| SBS | Chr4 | 28149693 | C-T | HET | ||
| SBS | Chr5 | 3274450 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g06390 |
| SBS | Chr5 | 4582177 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g08400 |
| SBS | Chr6 | 2169602 | T-A | HET | ||
| SBS | Chr6 | 16894255 | T-A | HET | ||
| SBS | Chr6 | 25868329 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g43030 |
| SBS | Chr7 | 2260419 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g05120 |
| SBS | Chr7 | 3348859 | T-C | Homo | ||
| SBS | Chr7 | 4126444 | G-A | Homo | ||
| SBS | Chr7 | 9300138 | C-T | Homo | ||
| SBS | Chr7 | 14937738 | G-A | Homo | ||
| SBS | Chr7 | 28263093 | C-T | Homo | ||
| SBS | Chr7 | 28706966 | T-A | Homo | ||
| SBS | Chr8 | 25189994 | G-A | Homo | ||
| SBS | Chr9 | 5442734 | C-A | HET | ||
| SBS | Chr9 | 13474060 | C-T | HET | ||
| SBS | Chr10 | 7984644 | G-C | HET | ||
| SBS | Chr10 | 11763009 | T-A | HET | ||
| SBS | Chr10 | 12408539 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24220 |
| SBS | Chr11 | 20395893 | C-A | HET | ||
| SBS | Chr12 | 2066821 | C-T | HET | ||
| SBS | Chr12 | 2066822 | C-T | HET | ||
| SBS | Chr12 | 14066262 | T-G | Homo | ||
| SBS | Chr12 | 18051331 | T-C | Homo | ||
| SBS | Chr12 | 20380033 | C-T | Homo |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 2255194 | 2255196 | 2 | |
| Deletion | Chr12 | 4113314 | 4113318 | 4 | LOC_Os12g08080 |
| Deletion | Chr1 | 6528911 | 6528912 | 1 | LOC_Os01g11990 |
| Deletion | Chr7 | 9159338 | 9159347 | 9 | |
| Deletion | Chr10 | 9713150 | 9713153 | 3 | |
| Deletion | Chr11 | 14469047 | 14469049 | 2 | |
| Deletion | Chr8 | 21511380 | 21511388 | 8 | |
| Deletion | Chr2 | 23789635 | 23789636 | 1 | LOC_Os02g39430 |
| Deletion | Chr11 | 25438441 | 25438444 | 3 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 16128616 | 16128617 | 2 | |
| Insertion | Chr4 | 15147584 | 15147584 | 1 | |
| Insertion | Chr4 | 15715307 | 15715307 | 1 | |
| Insertion | Chr10 | 317850 | 317850 | 1 | LOC_Os10g01490 |
| Insertion | Chr11 | 18079442 | 18079442 | 1 | |
| Insertion | Chr11 | 20879985 | 20879985 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 278963 | 1107286 | 2 |
| Inversion | Chr6 | 27620355 | 28340839 | LOC_Os06g45620 |
| Inversion | Chr6 | 27620356 | 28340835 | LOC_Os06g45620 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 3458838 | Chr2 | 6629961 | 2 |
| Translocation | Chr7 | 8446266 | Chr2 | 25035141 | |
| Translocation | Chr6 | 15605861 | Chr5 | 4531638 | 2 |
| Translocation | Chr8 | 16707202 | Chr4 | 1747530 | LOC_Os08g27360 |
| Translocation | Chr8 | 16707233 | Chr3 | 18172603 | LOC_Os08g27360 |
| Translocation | Chr6 | 22542295 | Chr2 | 2610258 | 2 |
| Translocation | Chr4 | 27248189 | Chr3 | 18277178 |