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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20153752	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36350
SBS	Chr1	28317533	T-C	HET
SBS	Chr2	22733666	G-A	Homo
SBS	Chr2	29857595	T-A	HET
SBS	Chr3	684162	A-G	HET
SBS	Chr3	5651785	A-G	HET
SBS	Chr3	20723272	G-T	Homo
SBS	Chr3	25646755	T-A	HET
SBS	Chr3	34132486	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g60010
SBS	Chr4	2269242	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04720
SBS	Chr4	7220630	C-A	HET
SBS	Chr4	10862941	A-C	HET
SBS	Chr5	13965791	T-A	HET
SBS	Chr5	13965794	T-C	HET
SBS	Chr6	16180561	C-T	Homo
SBS	Chr7	18705578	T-C	HET
SBS	Chr7	20901095	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g34870
SBS	Chr7	25656164	C-T	HET
SBS	Chr8	13306776	G-A	HET
SBS	Chr8	20963616	C-T	Homo
SBS	Chr9	866891	A-C	HET
SBS	Chr9	5392367	C-T	HET
SBS	Chr10	10490396	G-A	HET
SBS	Chr10	20841611	G-T	HET
SBS	Chr11	539285	G-T	HET
SBS	Chr11	7258784	G-A	HET
SBS	Chr11	26123620	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g43300
SBS	Chr12	1590623	A-G	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1338484	1338485	1	LOC_Os02g03310
Deletion	Chr3	8618704	8618705	1	LOC_Os03g15620
Deletion	Chr1	9309211	9309214	3	LOC_Os01g16390
Deletion	Chr1	10884004	10884006	2
Deletion	Chr9	13527798	13527800	2
Deletion	Chr12	13667868	13667878	10	LOC_Os12g24050
Deletion	Chr3	15896625	15896626	1
Deletion	Chr12	19731221	19731222	1	LOC_Os12g32680
Deletion	Chr11	21730737	21730739	2
Deletion	Chr5	23126883	23126884	1
Deletion	Chr4	23667291	23667292	1	LOC_Os04g39710
Deletion	Chr12	24095418	24095422	4
Deletion	Chr3	33725880	33725887	7

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	16603861	16603890	30
Insertion	Chr5	8423381	8423381	1
Insertion	Chr5	17463353	17463354	2
Insertion	Chr6	22348467	22348467	1
Insertion	Chr8	18523838	18523866	29
Insertion	Chr10	3190532	3190532	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	355976	356573	LOC_Os03g01560
Inversion	Chr8	12330457	12645915
Inversion	Chr8	12330461	12645925
Inversion	Chr8	23279634	23282728	LOC_Os08g36840
Inversion	Chr8	23279646	23282733	LOC_Os08g36840

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	7016388	Chr1	244865
Translocation	Chr8	10130360	Chr7	18122871
Translocation	Chr6	20931162	Chr1	22551268	LOC_Os06g35870
Translocation	Chr12	22302789	Chr2	9161658
Translocation	Chr6	31247529	Chr2	7

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