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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37531257	T-A	HET	INTERGENIC
SBS	Chr1	37531258	G-A	HET	INTERGENIC
SBS	Chr1	41289207	C-T	HOMO	INTERGENIC
SBS	Chr1	41289208	C-T	HOMO	INTERGENIC
SBS	Chr1	6808840	A-G	HET	INTERGENIC
SBS	Chr10	15386361	T-G	HET	INTERGENIC
SBS	Chr10	20790324	G-A	HOMO	INTERGENIC
SBS	Chr10	4678434	T-C	HET	INTERGENIC
SBS	Chr10	4721723	G-C	HET	INTRON
SBS	Chr11	3780517	G-T	HET	INTERGENIC
SBS	Chr11	9862738	A-G	HOMO	INTRON
SBS	Chr12	2864030	T-G	HOMO	INTERGENIC
SBS	Chr12	2864031	G-T	HOMO	INTERGENIC
SBS	Chr2	22813614	G-A	HOMO	INTRON
SBS	Chr3	11758167	A-T	HET	INTERGENIC
SBS	Chr3	11758168	C-T	HET	INTERGENIC
SBS	Chr3	14390097	A-T	HET	INTERGENIC
SBS	Chr3	15241479	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g26690
SBS	Chr3	15241481	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g26690
SBS	Chr3	15750461	G-T	HET	INTRON
SBS	Chr3	15792848	G-T	HET	INTRON
SBS	Chr3	18819865	T-A	HET	INTERGENIC
SBS	Chr3	18819866	G-A	HET	INTERGENIC
SBS	Chr3	30149723	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g52560
SBS	Chr4	17139212	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g28910
SBS	Chr4	6821779	G-A	HOMO	INTERGENIC
SBS	Chr5	2919403	A-G	HET	INTERGENIC
SBS	Chr5	5469540	G-A	HET	INTERGENIC
SBS	Chr6	8464333	C-T	HOMO	INTERGENIC
SBS	Chr8	21253536	C-A	HET	INTERGENIC
SBS	Chr9	12220716	G-T	HOMO	INTRON
SBS	Chr9	15916300	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	4302533	T-A	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	808381	808382	1
Deletion	Chr6	1401530	1401531	1
Deletion	Chr6	2968663	2968664	1
Deletion	Chr2	3701601	3701615	14
Deletion	Chr2	5297037	5297139	102
Deletion	Chr2	6149003	6149011	8
Deletion	Chr8	9289715	9315709	25994	4
Deletion	Chr9	11153791	11153803	12	LOC_Os09g18200
Deletion	Chr11	13173213	13173214	1
Deletion	Chr1	13794395	13794396	1
Deletion	Chr11	15761534	15761536	2
Deletion	Chr9	15916290	15916296	6	2
Deletion	Chr9	16351923	16351936	13
Deletion	Chr11	17041737	17041742	5
Deletion	Chr4	22157191	22157193	2
Deletion	Chr11	22828001	22875000	47000	7
Deletion	Chr7	25862712	25862716	4
Deletion	Chr3	31822001	31974000	152000	22
Deletion	Chr3	32774857	32774858	1
Deletion	Chr1	37840494	37840499	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	10970194	10970194	1
Insertion	Chr3	27507717	27507717	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6740777	7805043	LOC_Os12g13800
Inversion	Chr12	6740801	7805057	LOC_Os12g13800
Inversion	Chr3	30151637	31361407

No Translocation

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