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| Mutant Information |
|---|
| Mutant Name | FN3511-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3511-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20291945 | G-A | HET | ||
| SBS | Chr1 | 38726506 | C-T | HET | ||
| SBS | Chr10 | 1209604 | T-A | HET | ||
| SBS | Chr10 | 15223538 | A-G | Homo | ||
| SBS | Chr10 | 16950502 | C-T | Homo | ||
| SBS | Chr10 | 5306053 | G-T | HET | ||
| SBS | Chr11 | 23075533 | T-A | HET | ||
| SBS | Chr12 | 12223841 | A-G | HET | ||
| SBS | Chr12 | 13371033 | G-T | HET | ||
| SBS | Chr12 | 15883321 | G-A | HET | STOP_GAINED | LOC_Os12g27096 |
| SBS | Chr12 | 1650034 | G-T | HET | ||
| SBS | Chr12 | 470711 | A-T | HET | ||
| SBS | Chr2 | 21886773 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g36264 |
| SBS | Chr2 | 23085860 | A-G | Homo | ||
| SBS | Chr2 | 30356643 | C-A | Homo | SPLICE_SITE_DONOR | LOC_Os02g49670 |
| SBS | Chr2 | 8853945 | C-A | HET | ||
| SBS | Chr3 | 10071811 | G-C | HET | ||
| SBS | Chr3 | 27659765 | T-A | Homo | ||
| SBS | Chr3 | 31586940 | G-A | HET | ||
| SBS | Chr4 | 11667257 | C-T | HET | ||
| SBS | Chr5 | 5079295 | T-C | HET | ||
| SBS | Chr5 | 98085 | C-T | HET | ||
| SBS | Chr6 | 16826450 | C-T | HET | ||
| SBS | Chr7 | 17956511 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g30340 |
| SBS | Chr7 | 28254164 | C-T | HET | ||
| SBS | Chr7 | 28882176 | T-C | HET | ||
| SBS | Chr7 | 29070702 | A-T | HET | ||
| SBS | Chr7 | 29070703 | C-T | HET | ||
| SBS | Chr8 | 15331429 | C-T | Homo | ||
| SBS | Chr8 | 15843295 | T-C | HET | ||
| SBS | Chr8 | 23083355 | G-A | Homo | ||
| SBS | Chr9 | 12852439 | G-T | HET | ||
| SBS | Chr9 | 22520840 | T-C | Homo |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2820208 | 2820209 | 1 | |
| Deletion | Chr8 | 5935232 | 5935233 | 1 | |
| Deletion | Chr8 | 6654777 | 6654789 | 12 | |
| Deletion | Chr12 | 9384155 | 9384156 | 1 | LOC_Os12g16390 |
| Deletion | Chr1 | 10221001 | 10254000 | 32999 | 2 |
| Deletion | Chr4 | 10422025 | 10422026 | 1 | |
| Deletion | Chr4 | 13267456 | 13267471 | 15 | LOC_Os04g23250 |
| Deletion | Chr7 | 17374086 | 17374100 | 14 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 11689896 | 11689896 | 1 | |
| Insertion | Chr12 | 20680992 | 20680992 | 1 | |
| Insertion | Chr7 | 20029673 | 20029673 | 1 | |
| Insertion | Chr8 | 3883018 | 3883020 | 3 | LOC_Os08g06970 |
| Insertion | Chr9 | 19195501 | 19195525 | 25 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 854179 | 1077579 | LOC_Os07g02470 |
| Inversion | Chr12 | 5905100 | 6509112 | 2 |
| Inversion | Chr5 | 10064012 | 10198769 | 2 |
| Inversion | Chr7 | 14127067 | 14145709 | |
| Inversion | Chr10 | 20503710 | 20638112 | LOC_Os10g38370 |
| Inversion | Chr10 | 20503724 | 20638154 | LOC_Os10g38370 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 630382 | Chr7 | 854182 | 2 |
| Translocation | Chr10 | 631211 | Chr7 | 1077579 | |
| Translocation | Chr8 | 2694143 | Chr1 | 16146034 | 2 |
| Translocation | Chr3 | 14649827 | Chr1 | 17054878 | 2 |
| Translocation | Chr3 | 14649841 | Chr1 | 17056379 | 2 |
| Translocation | Chr8 | 15934919 | Chr7 | 6243112 | |
| Translocation | Chr6 | 16643523 | Chr4 | 35498481 | LOC_Os06g29170 |
| Translocation | Chr6 | 17433134 | Chr1 | 11574638 | |
| Translocation | Chr11 | 17663790 | Chr5 | 7287264 | LOC_Os11g30390 |
| Translocation | Chr11 | 24623347 | Chr8 | 9667644 | 2 |