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Mutant Information |
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Mutant Name | FN3512-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3512-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 34
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 17040391 | G-A | Homo | ||
SBS | Chr1 | 21079068 | C-A | Homo | ||
SBS | Chr1 | 30751183 | G-A | HET | ||
SBS | Chr1 | 34087542 | G-T | HET | ||
SBS | Chr1 | 34087543 | C-G | HET | ||
SBS | Chr2 | 6672860 | T-C | HET | ||
SBS | Chr2 | 12497437 | A-G | HET | ||
SBS | Chr2 | 18741148 | C-G | HET | ||
SBS | Chr3 | 6675326 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g12580 |
SBS | Chr3 | 12333874 | C-T | HET | ||
SBS | Chr3 | 19400304 | G-C | HET | ||
SBS | Chr3 | 23339286 | G-A | HET | ||
SBS | Chr4 | 7135508 | G-C | HET | ||
SBS | Chr4 | 10192884 | G-A | Homo | ||
SBS | Chr4 | 10192885 | A-C | Homo | ||
SBS | Chr4 | 18790296 | T-C | HET | ||
SBS | Chr6 | 2448077 | C-T | HET | ||
SBS | Chr6 | 2817857 | C-T | HET | ||
SBS | Chr6 | 8015309 | C-T | Homo | ||
SBS | Chr6 | 19832868 | A-T | Homo | ||
SBS | Chr6 | 29159055 | C-T | Homo | ||
SBS | Chr7 | 15905927 | T-C | HET | ||
SBS | Chr7 | 26794115 | G-C | HET | ||
SBS | Chr8 | 8174039 | G-A | HET | ||
SBS | Chr8 | 21738556 | C-A | HET | ||
SBS | Chr8 | 24438932 | T-C | Homo | ||
SBS | Chr9 | 4546861 | G-A | HET | ||
SBS | Chr9 | 6029287 | G-T | HET | ||
SBS | Chr9 | 21419153 | G-A | Homo | ||
SBS | Chr10 | 3865174 | T-A | HET | ||
SBS | Chr10 | 8965560 | C-T | HET | ||
SBS | Chr11 | 16150408 | G-A | HET | ||
SBS | Chr12 | 542962 | T-C | HET | ||
SBS | Chr12 | 5713737 | T-A | HET |
Deletions: 6
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr7 | 12594231 | 12594231 | 1 | |
Insertion | Chr8 | 4190770 | 4190770 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr5 | 19068402 | 19068671 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr5 | 10196616 | Chr4 | 22685824 | |
Translocation | Chr5 | 19291806 | Chr2 | 17063945 | |
Translocation | Chr5 | 27851550 | Chr2 | 34389635 | |
Translocation | Chr5 | 27851552 | Chr2 | 34387555 | 2 |