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| Mutant Information |
|---|
| Mutant Name | FN3513-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3513-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13395885 | A-C | HET | ||
| SBS | Chr1 | 20898081 | G-C | HET | ||
| SBS | Chr1 | 30753095 | T-A | Homo | ||
| SBS | Chr1 | 37157604 | C-T | HET | ||
| SBS | Chr1 | 892895 | T-C | Homo | ||
| SBS | Chr10 | 14798781 | G-A | Homo | ||
| SBS | Chr11 | 10385265 | T-A | HET | ||
| SBS | Chr11 | 12076407 | C-A | HET | ||
| SBS | Chr11 | 15679261 | C-A | HET | ||
| SBS | Chr11 | 18423313 | G-A | HET | ||
| SBS | Chr11 | 20359605 | C-T | HET | ||
| SBS | Chr2 | 27314215 | T-A | HET | ||
| SBS | Chr3 | 14723948 | A-G | HET | ||
| SBS | Chr3 | 17996519 | G-A | HET | ||
| SBS | Chr3 | 28562134 | A-C | HET | ||
| SBS | Chr3 | 32828675 | G-A | HET | ||
| SBS | Chr3 | 494415 | G-A | HET | ||
| SBS | Chr4 | 21667449 | C-G | HET | ||
| SBS | Chr5 | 13903545 | A-G | Homo | ||
| SBS | Chr5 | 2149254 | G-A | Homo | ||
| SBS | Chr5 | 29493949 | T-A | HET | ||
| SBS | Chr6 | 30927971 | T-A | Homo | ||
| SBS | Chr7 | 21186315 | G-T | HET | ||
| SBS | Chr8 | 3101143 | C-T | HET | ||
| SBS | Chr9 | 16922129 | G-A | HET | ||
| SBS | Chr9 | 20294558 | A-G | HET | ||
| SBS | Chr9 | 3022752 | C-T | Homo | ||
| SBS | Chr9 | 9650266 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g15800 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 6374318 | 6374319 | 1 | |
| Deletion | Chr10 | 7209709 | 7209769 | 60 | LOC_Os10g13350 |
| Deletion | Chr12 | 8459840 | 8459842 | 2 | |
| Deletion | Chr3 | 11722542 | 11722552 | 10 | |
| Deletion | Chr6 | 13928338 | 13928347 | 9 | LOC_Os06g23840 |
| Deletion | Chr5 | 20728984 | 20728985 | 1 | |
| Deletion | Chr1 | 20823953 | 20823955 | 2 | |
| Deletion | Chr3 | 24139925 | 24139926 | 1 | |
| Deletion | Chr11 | 24202508 | 24202515 | 7 | |
| Deletion | Chr2 | 33527278 | 33527287 | 9 |
Insertions: 5
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 13378808 | 13392782 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 4012170 | Chr1 | 5474318 | |
| Translocation | Chr8 | 8561243 | Chr1 | 14847320 | LOC_Os08g14290 |
| Translocation | Chr11 | 16293104 | Chr6 | 21297466 | |
| Translocation | Chr11 | 16293356 | Chr6 | 21297467 | |
| Translocation | Chr11 | 23662080 | Chr9 | 9394780 | |
| Translocation | Chr4 | 25925087 | Chr1 | 11224829 | 2 |