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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2059643	C-T	Homo
SBS	Chr1	20877012	A-T	HET
SBS	Chr1	23297858	C-T	HET
SBS	Chr1	33702775	C-T	HET
SBS	Chr1	37103415	G-A	HET
SBS	Chr1	42410160	C-G	HET
SBS	Chr1	7215259	G-A	HET
SBS	Chr10	20435381	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g38150
SBS	Chr10	20435382	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g38150
SBS	Chr10	2740971	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g05530
SBS	Chr11	12959776	G-T	HET
SBS	Chr11	25501492	C-A	HET
SBS	Chr11	25501493	T-A	HET
SBS	Chr11	25501494	T-C	HET
SBS	Chr12	14960326	G-T	HET
SBS	Chr12	25374396	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g41000
SBS	Chr12	3128026	G-A	HET
SBS	Chr12	3775690	A-G	HET
SBS	Chr2	27379355	T-C	Homo
SBS	Chr2	27379357	C-A	Homo
SBS	Chr2	31884767	A-T	Homo
SBS	Chr3	16382476	C-A	HET
SBS	Chr3	24871869	C-A	Homo
SBS	Chr3	27392460	C-T	Homo
SBS	Chr4	32625865	C-T	HET
SBS	Chr5	14707109	A-G	HET
SBS	Chr5	19032712	C-T	HET
SBS	Chr5	28654205	T-C	Homo
SBS	Chr5	6320430	G-T	HET
SBS	Chr6	17364138	G-A	Homo
SBS	Chr6	29845937	G-A	HET
SBS	Chr6	7988410	C-A	HET
SBS	Chr7	17536570	C-T	HET
SBS	Chr8	3029507	A-C	HET
SBS	Chr8	7366327	A-T	HET
SBS	Chr9	9309535	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15270

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1531121	1531124	3
Deletion	Chr7	7425985	7425986	1
Deletion	Chr1	9340773	9340774	1
Deletion	Chr12	11007461	11007463	2
Deletion	Chr1	11060458	11060471	13
Deletion	Chr7	11371790	11371792	2
Deletion	Chr8	16053420	16053438	18	LOC_Os08g26330
Deletion	Chr2	20411225	20411231	6
Deletion	Chr10	20489001	20506000	16999	4
Deletion	Chr10	20509001	20569000	59999	11
Deletion	Chr10	20637001	20669000	31999	7
Deletion	Chr3	20774192	20774194	2
Deletion	Chr5	23204434	23204439	5
Deletion	Chr2	23273688	23273702	14
Deletion	Chr2	23985362	23985368	6
Deletion	Chr5	24184957	24184966	9	LOC_Os05g41290
Deletion	Chr12	24331808	24331928	120
Deletion	Chr2	26192584	26192590	6	LOC_Os02g43400
Deletion	Chr4	26579499	26579505	6
Deletion	Chr2	29760712	29760713	1
Deletion	Chr2	29944485	29944493	8
Deletion	Chr2	31884777	31884778	1
Deletion	Chr3	33761554	33761562	8
Deletion	Chr3	33781487	33781489	2	LOC_Os03g59340

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	25040564	25040565	2
Insertion	Chr5	29695798	29695798	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	20568526	20668794

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	318268	Chr1	42446924	2
Translocation	Chr4	7547795	Chr1	2551163	2
Translocation	Chr11	14273951	Chr10	20568514	LOC_Os11g25050

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