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Mutant Information

Mutant Name	FN3519-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3519-S Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5297950	C-T	Homo
SBS	Chr10	11471585	C-T	HET
SBS	Chr10	18538609	T-C	Homo
SBS	Chr10	6748601	T-A	HET
SBS	Chr10	6958648	C-T	HET
SBS	Chr10	8503191	A-C	HET
SBS	Chr2	7376429	C-T	Homo
SBS	Chr3	34906388	C-T	HET
SBS	Chr4	14751594	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g25454
SBS	Chr4	4601304	T-C	Homo
SBS	Chr6	6219203	C-T	Homo
SBS	Chr7	13114635	C-T	HET
SBS	Chr7	28499813	C-T	Homo
SBS	Chr7	28499814	T-A	Homo
SBS	Chr8	15384306	T-C	HET
SBS	Chr8	26174802	G-T	HET

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2675132	2675139	7
Deletion	Chr4	4639379	4639389	10
Deletion	Chr12	5735001	5741000	5999	2
Deletion	Chr1	6045777	6045783	6
Deletion	Chr3	13106943	13107034	91
Deletion	Chr6	14446019	14446027	8
Deletion	Chr3	16685477	16685692	215
Deletion	Chr9	17791338	17791350	12	LOC_Os09g29310
Deletion	Chr12	22899338	22899349	11

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	28719152	28719157	6	LOC_Os06g47380
Insertion	Chr8	17910649	17910666	18
Insertion	Chr8	18431140	18431140	1
Insertion	Chr8	6448074	6448074	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	460187	869338	2
Inversion	Chr10	868771	869344	LOC_Os10g02380
Inversion	Chr11	13850904	14631271	LOC_Os11g24310
Inversion	Chr11	13850918	14631304	LOC_Os11g24310
Inversion	Chr10	17183401	17222701	2
Inversion	Chr10	17183431	17222708	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4000966	Chr7	3512208
Translocation	Chr12	5741214	Chr11	8746723	LOC_Os12g10710
Translocation	Chr12	5741740	Chr11	8746721	LOC_Os12g10710
Translocation	Chr10	6817936	Chr6	18374037	2
Translocation	Chr9	12688235	Chr1	14628333
Translocation	Chr10	13753522	Chr7	14587086
Translocation	Chr10	13753623	Chr7	14587095
Translocation	Chr12	22172483	Chr8	3236266
Translocation	Chr3	25354383	Chr1	32550341
Translocation	Chr11	27773718	Chr8	4172940	2