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| Mutant Information |
|---|
| Mutant Name | FN3521-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3521-S Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13042429 | T-A | HET | ||
| SBS | Chr1 | 17116878 | G-A | HET | ||
| SBS | Chr1 | 2665738 | C-A | HET | ||
| SBS | Chr1 | 27827336 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g48525 |
| SBS | Chr1 | 28158877 | G-T | HET | ||
| SBS | Chr1 | 34086803 | G-A | HET | ||
| SBS | Chr1 | 42618365 | G-A | HET | ||
| SBS | Chr1 | 6141042 | G-A | HET | ||
| SBS | Chr10 | 20114395 | G-C | HET | ||
| SBS | Chr10 | 431390 | C-G | HET | ||
| SBS | Chr10 | 6623881 | G-A | HET | ||
| SBS | Chr11 | 14883567 | C-T | HET | ||
| SBS | Chr11 | 7587452 | G-A | Homo | ||
| SBS | Chr11 | 8718016 | A-G | HET | ||
| SBS | Chr2 | 19479248 | A-C | HET | ||
| SBS | Chr2 | 23796952 | G-A | Homo | ||
| SBS | Chr2 | 5597801 | G-A | Homo | ||
| SBS | Chr3 | 19675627 | C-T | Homo | ||
| SBS | Chr3 | 4689031 | C-T | HET | ||
| SBS | Chr4 | 24997680 | C-T | HET | ||
| SBS | Chr5 | 19136883 | C-T | HET | ||
| SBS | Chr5 | 8839104 | T-C | HET | ||
| SBS | Chr5 | 8890715 | A-T | HET | ||
| SBS | Chr6 | 10451712 | C-T | Homo | ||
| SBS | Chr6 | 11794165 | T-A | Homo | ||
| SBS | Chr7 | 3967745 | G-A | HET | ||
| SBS | Chr7 | 6543809 | A-G | Homo | ||
| SBS | Chr7 | 8372625 | T-C | Homo | ||
| SBS | Chr8 | 18297232 | C-T | HET | ||
| SBS | Chr8 | 18781364 | G-A | HET | ||
| SBS | Chr8 | 18988922 | A-G | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 5214719 | 5214960 | 241 | |
| Deletion | Chr12 | 12029895 | 12029896 | 1 | |
| Deletion | Chr10 | 16100027 | 16100030 | 3 | |
| Deletion | Chr3 | 17135542 | 17135543 | 1 | LOC_Os03g30030 |
| Deletion | Chr6 | 19850157 | 19850163 | 6 | |
| Deletion | Chr3 | 21955788 | 21955789 | 1 | |
| Deletion | Chr11 | 23957376 | 23957380 | 4 | |
| Deletion | Chr5 | 25868731 | 25868733 | 2 | |
| Deletion | Chr2 | 32801321 | 32801322 | 1 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 10095824 | 10095825 | 2 | |
| Insertion | Chr6 | 7497720 | 7497721 | 2 | |
| Insertion | Chr7 | 4843878 | 4843878 | 1 | LOC_Os07g09240 |
| Insertion | Chr8 | 16212030 | 16212031 | 2 | |
| Insertion | Chr8 | 23317908 | 23317908 | 1 | |
| Insertion | Chr8 | 95845 | 95856 | 12 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 23037759 | 24017728 | |
| Inversion | Chr4 | 23037766 | 24017914 |
Translocations: 13
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 3410028 | Chr3 | 5309072 | |
| Translocation | Chr8 | 3410401 | Chr3 | 5309078 | |
| Translocation | Chr8 | 3410418 | Chr4 | 28068111 | 2 |
| Translocation | Chr8 | 5407408 | Chr4 | 23800315 | |
| Translocation | Chr10 | 8109710 | Chr8 | 6052738 | |
| Translocation | Chr11 | 11461325 | Chr10 | 13795166 | |
| Translocation | Chr7 | 13890993 | Chr4 | 15170551 | |
| Translocation | Chr9 | 16001490 | Chr4 | 28066784 | 2 |
| Translocation | Chr11 | 18671275 | Chr7 | 7595531 | 2 |
| Translocation | Chr6 | 21938610 | Chr4 | 24017732 | LOC_Os06g37140 |
| Translocation | Chr6 | 21945932 | Chr4 | 24017885 | |
| Translocation | Chr6 | 23039382 | Chr3 | 11869185 | LOC_Os06g38810 |
| Translocation | Chr11 | 28093853 | Chr3 | 1075645 |