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| Mutant Information |
|---|
| Mutant Name | FN3522-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3522-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1728257 | C-T | HET | ||
| SBS | Chr1 | 26991669 | G-A | HET | ||
| SBS | Chr1 | 27618486 | A-G | HET | ||
| SBS | Chr1 | 32257791 | A-G | HET | ||
| SBS | Chr10 | 1222779 | T-A | HET | ||
| SBS | Chr10 | 14563562 | A-C | HET | ||
| SBS | Chr10 | 18840642 | A-C | HET | ||
| SBS | Chr11 | 27227877 | G-A | Homo | ||
| SBS | Chr11 | 27740539 | G-A | Homo | ||
| SBS | Chr11 | 7801195 | T-C | HET | ||
| SBS | Chr12 | 15425754 | T-C | HET | ||
| SBS | Chr12 | 19697356 | T-C | HET | ||
| SBS | Chr12 | 21581094 | T-A | HET | ||
| SBS | Chr12 | 21581095 | G-A | HET | ||
| SBS | Chr12 | 24003900 | G-A | HET | ||
| SBS | Chr12 | 4270254 | C-G | Homo | ||
| SBS | Chr12 | 4473870 | G-A | Homo | ||
| SBS | Chr12 | 9173871 | C-A | HET | ||
| SBS | Chr2 | 14459784 | A-G | HET | ||
| SBS | Chr2 | 20846512 | G-A | HET | ||
| SBS | Chr2 | 21643785 | G-A | HET | ||
| SBS | Chr2 | 2298355 | T-C | Homo | ||
| SBS | Chr2 | 30621811 | T-C | HET | ||
| SBS | Chr2 | 31047409 | C-T | HET | ||
| SBS | Chr3 | 21069180 | C-T | HET | ||
| SBS | Chr3 | 30747087 | T-C | HET | ||
| SBS | Chr3 | 30995256 | A-C | HET | ||
| SBS | Chr4 | 15112247 | C-T | HET | ||
| SBS | Chr4 | 23445417 | G-A | HET | ||
| SBS | Chr6 | 26832941 | T-A | HET | ||
| SBS | Chr6 | 26854365 | T-G | Homo | ||
| SBS | Chr6 | 27500219 | G-C | HET | ||
| SBS | Chr7 | 21858864 | T-A | Homo | ||
| SBS | Chr8 | 21293958 | C-A | HET | ||
| SBS | Chr8 | 23116200 | C-T | Homo | ||
| SBS | Chr8 | 7616571 | G-A | Homo |
Deletions: 10
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 16256193 | 16256193 | 1 | |
| Insertion | Chr4 | 2364347 | 2364347 | 1 | |
| Insertion | Chr7 | 27316836 | 27316836 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 18401686 | 19168152 | 2 |
| Inversion | Chr2 | 31921368 | 32378703 | 2 |
| Inversion | Chr2 | 31921373 | 32378703 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 1034286 | Chr1 | 21044943 | 2 |
| Translocation | Chr8 | 14501710 | Chr6 | 8672219 | |
| Translocation | Chr3 | 14993935 | Chr2 | 24252965 | LOC_Os03g26200 |
| Translocation | Chr11 | 24742931 | Chr8 | 1874379 |