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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22663015	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g40170
SBS	Chr1	9598032	C-A	Homo
SBS	Chr10	10043080	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g20020
SBS	Chr10	16077925	G-A	HET
SBS	Chr10	16077936	G-A	HET
SBS	Chr10	22747165	C-T	Homo
SBS	Chr11	10032727	G-A	HET
SBS	Chr11	15276450	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g26670
SBS	Chr11	18716104	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31840
SBS	Chr11	20582144	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35110
SBS	Chr12	11804931	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g20240
SBS	Chr12	17703860	A-T	HET
SBS	Chr12	19490215	C-G	HET
SBS	Chr12	25719047	G-A	HET
SBS	Chr12	4374634	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g08600
SBS	Chr12	7595754	A-T	HET
SBS	Chr12	8372621	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14640
SBS	Chr12	8512921	C-G	HET
SBS	Chr2	20138267	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g33750
SBS	Chr2	34547468	G-A	HET
SBS	Chr3	11736758	C-T	HET
SBS	Chr3	29891280	A-T	HET
SBS	Chr4	6545209	G-A	HET
SBS	Chr6	10689362	T-G	HET
SBS	Chr6	14953137	T-C	HET
SBS	Chr6	17037970	G-A	Homo
SBS	Chr6	26920085	T-C	HET
SBS	Chr7	14133398	G-A	Homo
SBS	Chr7	23008455	T-A	HET
SBS	Chr7	23008456	C-A	HET
SBS	Chr8	20444446	G-A	Homo
SBS	Chr8	27195245	C-A	HET
SBS	Chr8	784699	A-G	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	852652	852654	2
Deletion	Chr9	1905221	1905223	2
Deletion	Chr1	2011001	2073000	61999	11
Deletion	Chr1	6414347	6414355	8
Deletion	Chr8	16307356	16307357	1
Deletion	Chr12	18001001	18122000	120999	13
Deletion	Chr6	20318795	20318797	2
Deletion	Chr6	20691284	20691285	1	LOC_Os06g35490
Deletion	Chr10	22433988	22434002	14
Deletion	Chr1	22574951	22574956	5
Deletion	Chr12	23355543	23355544	1	LOC_Os12g38020
Deletion	Chr11	23653404	23653405	1
Deletion	Chr5	23856003	23856008	5
Deletion	Chr11	24717083	24717086	3	LOC_Os11g41210
Deletion	Chr12	25785633	25785645	12
Deletion	Chr3	26061955	26061956	1	LOC_Os03g46080
Deletion	Chr11	26826861	26826867	6

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	34644905	34644906	2
Insertion	Chr3	13380250	13380250	1
Insertion	Chr4	18930504	18930505	2
Insertion	Chr7	171740	171740	1
Insertion	Chr8	2861142	2861189	48

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	693844	918631	LOC_Os10g02100
Inversion	Chr10	693845	918977	LOC_Os10g02100

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	724907	Chr3	31273254
Translocation	Chr12	2399395	Chr1	32064842	LOC_Os12g05334
Translocation	Chr4	7245320	Chr1	33160322
Translocation	Chr8	7315223	Chr6	18384318	2
Translocation	Chr10	8050573	Chr8	18696415	LOC_Os10g15210
Translocation	Chr11	9272083	Chr7	17681169	LOC_Os11g16730
Translocation	Chr11	14753919	Chr6	9352429
Translocation	Chr4	15192641	Chr3	1262854
Translocation	Chr8	22301720	Chr6	13618918
Translocation	Chr3	23114127	Chr1	4736169	2

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