Search Results
| Mutant Information |
|---|
| Mutant Name | FN3525-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3525-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 8294343 | G-T | HET | ||
| SBS | Chr3 | 4381615 | G-T | HET | ||
| SBS | Chr3 | 29720853 | C-G | Homo | ||
| SBS | Chr3 | 34362621 | G-A | Homo | ||
| SBS | Chr4 | 3128352 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g06030 |
| SBS | Chr4 | 23144813 | C-A | HET | ||
| SBS | Chr4 | 23928393 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g40220 |
| SBS | Chr4 | 27923467 | A-G | HET | ||
| SBS | Chr5 | 8038920 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g14300 |
| SBS | Chr6 | 24821631 | T-C | HET | ||
| SBS | Chr6 | 25423806 | C-T | HET | ||
| SBS | Chr6 | 29497155 | T-A | HET | ||
| SBS | Chr7 | 8918134 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g15420 |
| SBS | Chr7 | 25602173 | T-A | HET | ||
| SBS | Chr8 | 762157 | C-T | HET | ||
| SBS | Chr8 | 1738595 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g03660 |
| SBS | Chr8 | 12361253 | C-T | HET | ||
| SBS | Chr9 | 3770182 | G-A | Homo | ||
| SBS | Chr9 | 13266098 | C-A | HET | ||
| SBS | Chr10 | 4357025 | C-T | HET | ||
| SBS | Chr10 | 15983091 | A-G | Homo | ||
| SBS | Chr11 | 1157858 | C-T | Homo | ||
| SBS | Chr11 | 1664454 | G-A | Homo | ||
| SBS | Chr11 | 1664455 | T-A | Homo | ||
| SBS | Chr11 | 2737423 | G-A | HET | ||
| SBS | Chr12 | 8837691 | A-T | HET | ||
| SBS | Chr12 | 15313051 | G-A | HET | ||
| SBS | Chr12 | 23902645 | C-A | HET | ||
| SBS | Chr12 | 25064050 | T-C | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 1798974 | 1798975 | 1 | |
| Deletion | Chr9 | 5374723 | 5374724 | 1 | LOC_Os09g09880 |
| Deletion | Chr1 | 5822808 | 5822822 | 14 | |
| Deletion | Chr5 | 6222278 | 6222285 | 7 | |
| Deletion | Chr4 | 6514001 | 6611000 | 96999 | 17 |
| Deletion | Chr9 | 6883519 | 6883520 | 1 | LOC_Os09g12170 |
| Deletion | Chr11 | 11380109 | 11380110 | 1 | |
| Deletion | Chr5 | 15135978 | 15135979 | 1 | |
| Deletion | Chr3 | 17802643 | 17802654 | 11 | LOC_Os03g31254 |
| Deletion | Chr3 | 27958854 | 27958861 | 7 | |
| Deletion | Chr7 | 28366635 | 28366642 | 7 | LOC_Os07g47440 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 34834921 | 34834923 | 3 | |
| Insertion | Chr5 | 29865786 | 29865787 | 2 | |
| Insertion | Chr8 | 95845 | 95848 | 4 | |
| Insertion | Chr8 | 6945205 | 6945205 | 1 | |
| Insertion | Chr8 | 11160608 | 11160608 | 1 | LOC_Os08g18210 |
| Insertion | Chr12 | 4130499 | 4130499 | 1 | LOC_Os12g08100 |
| Insertion | Chr12 | 8548657 | 8548658 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 19710657 | 19754211 | 2 |
| Inversion | Chr3 | 32007303 | 32045920 | 2 |
| Inversion | Chr3 | 32007311 | 32045950 | 2 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4909003 | Chr5 | 10198658 | 2 |
| Translocation | Chr10 | 6864491 | Chr7 | 15626068 | LOC_Os10g12330 |
| Translocation | Chr3 | 15238101 | Chr2 | 3401794 | |
| Translocation | Chr11 | 15746023 | Chr1 | 2790273 | 2 |
| Translocation | Chr8 | 16783131 | Chr5 | 13970147 | 2 |
| Translocation | Chr12 | 19763183 | Chr5 | 15788925 | |
| Translocation | Chr10 | 22890526 | Chr6 | 18908693 |