Search Results
| Mutant Information |
|---|
| Mutant Name | FN3529-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3529-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3886657 | A-G | Homo | ||
| SBS | Chr1 | 15540957 | T-C | HET | ||
| SBS | Chr1 | 20841751 | C-T | HET | ||
| SBS | Chr1 | 28494483 | A-G | HET | ||
| SBS | Chr1 | 34529778 | T-C | HET | ||
| SBS | Chr2 | 1547515 | A-T | Homo | ||
| SBS | Chr2 | 27266860 | C-G | HET | ||
| SBS | Chr2 | 30510568 | G-A | HET | ||
| SBS | Chr4 | 2921886 | G-T | HET | ||
| SBS | Chr4 | 7895183 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g14130 |
| SBS | Chr4 | 15419912 | C-G | Homo | ||
| SBS | Chr5 | 25083235 | C-T | HET | ||
| SBS | Chr6 | 10612153 | C-A | HET | ||
| SBS | Chr7 | 21158111 | C-T | HET | ||
| SBS | Chr7 | 26085119 | T-G | HET | ||
| SBS | Chr8 | 2805158 | C-A | HET | ||
| SBS | Chr8 | 2805160 | C-T | HET | ||
| SBS | Chr8 | 3110922 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g05800 |
| SBS | Chr8 | 7425703 | T-A | HET | ||
| SBS | Chr8 | 16801453 | A-G | HET | ||
| SBS | Chr8 | 19444787 | C-T | HET | ||
| SBS | Chr9 | 1915004 | T-G | HET | ||
| SBS | Chr10 | 1313749 | C-A | HET | ||
| SBS | Chr10 | 4550314 | G-A | HET | ||
| SBS | Chr10 | 8269920 | A-T | HET | ||
| SBS | Chr11 | 17142812 | A-G | HET | ||
| SBS | Chr12 | 1283801 | T-C | HET | ||
| SBS | Chr12 | 2015869 | A-T | HET | ||
| SBS | Chr12 | 2790724 | A-T | HET | ||
| SBS | Chr12 | 8161148 | C-T | Homo | ||
| SBS | Chr12 | 19521658 | C-T | HET | ||
| SBS | Chr12 | 19521942 | A-T | HET | ||
| SBS | Chr12 | 24429731 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g39590 |
| SBS | Chr12 | 24777530 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g40070 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 678939 | 678951 | 12 | |
| Deletion | Chr3 | 2815757 | 2815760 | 3 | LOC_Os03g05640 |
| Deletion | Chr11 | 8122004 | 8122005 | 1 | LOC_Os11g14460 |
| Deletion | Chr2 | 13122001 | 13145000 | 22999 | 5 |
| Deletion | Chr11 | 15436215 | 15436217 | 2 | |
| Deletion | Chr9 | 16495536 | 16495538 | 2 | |
| Deletion | Chr6 | 17234669 | 17234672 | 3 | |
| Deletion | Chr7 | 17700662 | 17700664 | 2 | LOC_Os07g30030 |
| Deletion | Chr5 | 23675295 | 23675296 | 1 | |
| Deletion | Chr4 | 31668251 | 31668259 | 8 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 15267360 | 15267360 | 1 | LOC_Os12g26190 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 14534925 | 14548971 | |
| Inversion | Chr1 | 37038799 | 37126687 | 2 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 2474541 | Chr6 | 24981541 | |
| Translocation | Chr8 | 4306968 | Chr6 | 25086846 | |
| Translocation | Chr6 | 5537862 | Chr4 | 8208164 | |
| Translocation | Chr5 | 8477890 | Chr1 | 39616381 | 2 |
| Translocation | Chr5 | 8480626 | Chr1 | 37126682 | 2 |
| Translocation | Chr6 | 10800796 | Chr4 | 16768960 | |
| Translocation | Chr5 | 10864899 | Chr4 | 31679950 | 2 |
| Translocation | Chr4 | 11225816 | Chr1 | 13093207 | 2 |
| Translocation | Chr12 | 17220116 | Chr8 | 4874715 | 2 |
| Translocation | Chr9 | 20546837 | Chr6 | 23626170 | LOC_Os09g35720 |