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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13489754	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g23970
SBS	Chr10	9108695	G-A	HET
SBS	Chr10	9223368	G-A	HET
SBS	Chr11	7881741	A-T	Homo
SBS	Chr11	7881749	C-T	Homo
SBS	Chr12	10109022	G-A	HET
SBS	Chr12	12120005	C-T	HET
SBS	Chr12	14985730	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25830
SBS	Chr2	10295207	C-T	HET
SBS	Chr2	1091700	C-A	HET
SBS	Chr2	34079800	A-G	HET
SBS	Chr2	34763519	C-T	HET
SBS	Chr2	9229310	C-T	Homo
SBS	Chr3	18714049	G-C	Homo
SBS	Chr3	30494179	C-T	HET
SBS	Chr4	10955547	A-G	HET
SBS	Chr4	1622383	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03680
SBS	Chr4	20697244	T-C	HET
SBS	Chr4	35207580	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g59190
SBS	Chr5	27891801	C-T	Homo
SBS	Chr6	12641398	G-C	HET
SBS	Chr6	2459982	C-A	HET
SBS	Chr6	2459983	G-A	HET
SBS	Chr6	7931432	C-T	HET
SBS	Chr7	1982288	G-A	Homo
SBS	Chr7	25880489	C-T	HET
SBS	Chr8	12636962	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g21140
SBS	Chr8	12636963	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g21140
SBS	Chr8	24555854	G-A	HET
SBS	Chr8	24833187	G-A	HET
SBS	Chr8	5712984	T-A	Homo
SBS	Chr8	5712985	C-A	Homo
SBS	Chr9	12324772	A-G	HET
SBS	Chr9	13850073	G-T	HET
SBS	Chr9	22937483	T-C	HET
SBS	Chr9	3264197	T-G	Homo

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	89919	89920	1	LOC_Os02g01170
Deletion	Chr9	683293	683294	1
Deletion	Chr9	1259650	1259661	11
Deletion	Chr5	2110801	2110805	4
Deletion	Chr11	5324738	5324746	8
Deletion	Chr11	7738806	7738808	2
Deletion	Chr11	7878137	7878138	1
Deletion	Chr11	9230673	9230677	4
Deletion	Chr6	10353001	10387000	33999	6
Deletion	Chr2	10564001	10610000	45999	11
Deletion	Chr11	11869090	11869093	3
Deletion	Chr1	16667598	16667601	3	LOC_Os01g29750
Deletion	Chr12	17624118	17624131	13
Deletion	Chr5	19036483	19036484	1
Deletion	Chr3	23128496	23128502	6	LOC_Os03g41600
Deletion	Chr3	34668736	34668758	22

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	345410	345412	3
Insertion	Chr4	11973142	11973142	1
Insertion	Chr7	4450627	4450627	1
Insertion	Chr8	17446884	17446884	1
Insertion	Chr8	23633300	23633303	4

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3744341	4038480
Inversion	Chr11	6198171	6257215
Inversion	Chr11	6198183	6257287
Inversion	Chr11	12780760	12784358	2
Inversion	Chr11	12780786	12784368	2
Inversion	Chr2	14060181	14060693
Inversion	Chr5	28322855	28887493	LOC_Os05g49390

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	12780788	Chr2	1935626
Translocation	Chr7	20630385	Chr6	23676698
Translocation	Chr7	20630400	Chr6	23676077

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