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| Mutant Information |
|---|
| Mutant Name | FN3533-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3533-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13327919 | G-A | Homo | ||
| SBS | Chr1 | 8079454 | G-A | HET | ||
| SBS | Chr1 | 896599 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g02650 |
| SBS | Chr11 | 1117790 | C-T | HET | ||
| SBS | Chr12 | 13676056 | T-A | Homo | ||
| SBS | Chr12 | 15613360 | A-G | Homo | ||
| SBS | Chr12 | 21717922 | C-T | Homo | ||
| SBS | Chr2 | 29401125 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g48030 |
| SBS | Chr3 | 33618389 | C-T | HET | ||
| SBS | Chr4 | 6188006 | T-C | Homo | ||
| SBS | Chr5 | 15789744 | A-C | HET | ||
| SBS | Chr5 | 25245078 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g43410 |
| SBS | Chr6 | 14875099 | C-T | HET | ||
| SBS | Chr6 | 17548656 | G-T | HET | ||
| SBS | Chr6 | 25344995 | A-T | HET | ||
| SBS | Chr6 | 863461 | G-T | HET | ||
| SBS | Chr7 | 14381878 | G-A | Homo | ||
| SBS | Chr8 | 17606185 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g28784 |
| SBS | Chr9 | 13060128 | G-T | HET | ||
| SBS | Chr9 | 16225255 | G-A | Homo | ||
| SBS | Chr9 | 21119084 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g36610 |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 2933339 | 2933340 | 1 | |
| Deletion | Chr2 | 3269255 | 3269401 | 146 | |
| Deletion | Chr5 | 4616095 | 4616106 | 11 | |
| Deletion | Chr11 | 4780578 | 4780581 | 3 | LOC_Os11g09000 |
| Deletion | Chr4 | 4958227 | 4958531 | 304 | LOC_Os04g09330 |
| Deletion | Chr5 | 5078775 | 5078781 | 6 | |
| Deletion | Chr5 | 5275222 | 5275225 | 3 | |
| Deletion | Chr4 | 5671722 | 5671723 | 1 | |
| Deletion | Chr2 | 8447738 | 8447743 | 5 | LOC_Os02g15150 |
| Deletion | Chr10 | 10198047 | 10198048 | 1 | LOC_Os10g20280 |
| Deletion | Chr4 | 11010447 | 11010457 | 10 | |
| Deletion | Chr11 | 13947508 | 13947514 | 6 | |
| Deletion | Chr8 | 15369518 | 15369519 | 1 | |
| Deletion | Chr2 | 17475496 | 17475497 | 1 | |
| Deletion | Chr11 | 19498192 | 19498193 | 1 | |
| Deletion | Chr10 | 19603688 | 19603697 | 9 | |
| Deletion | Chr7 | 26009050 | 26009054 | 4 | |
| Deletion | Chr2 | 30420831 | 30420832 | 1 |
Insertions: 6
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 22269984 | 22428327 | |
| Inversion | Chr5 | 22269986 | 22428325 |
Translocations: 13
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 985230 | Chr1 | 25907714 | LOC_Os08g02460 |
| Translocation | Chr12 | 5053178 | Chr3 | 8308083 | 2 |
| Translocation | Chr11 | 5074004 | Chr7 | 420971 | LOC_Os11g09460 |
| Translocation | Chr9 | 8146703 | Chr8 | 19798043 | 2 |
| Translocation | Chr9 | 9725072 | Chr6 | 8613918 | 2 |
| Translocation | Chr11 | 15950035 | Chr1 | 14847997 | |
| Translocation | Chr12 | 17220098 | Chr7 | 18137538 | 2 |
| Translocation | Chr8 | 19804670 | Chr7 | 1870478 | LOC_Os08g31940 |
| Translocation | Chr8 | 20135842 | Chr1 | 2999831 | 2 |
| Translocation | Chr6 | 23251200 | Chr3 | 13645054 | LOC_Os06g39160 |
| Translocation | Chr11 | 23286594 | Chr1 | 41587084 | |
| Translocation | Chr3 | 26496232 | Chr2 | 5969105 | |
| Translocation | Chr11 | 28163364 | Chr8 | 2141390 | LOC_Os11g46880 |