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| Mutant Information |
|---|
| Mutant Name | FN3536-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3536-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19577121 | C-G | Homo | ||
| SBS | Chr1 | 23712625 | G-A | Homo | ||
| SBS | Chr1 | 31447563 | C-T | HET | ||
| SBS | Chr1 | 31842232 | A-G | HET | ||
| SBS | Chr1 | 41140904 | A-G | HET | ||
| SBS | Chr1 | 42177016 | C-T | HET | ||
| SBS | Chr10 | 18694206 | C-A | Homo | ||
| SBS | Chr10 | 23098284 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g42830 |
| SBS | Chr11 | 2616905 | G-T | HET | ||
| SBS | Chr12 | 10024767 | G-A | HET | ||
| SBS | Chr12 | 16581497 | A-G | HET | ||
| SBS | Chr2 | 11555774 | C-G | HET | ||
| SBS | Chr2 | 14860495 | T-A | HET | ||
| SBS | Chr2 | 26674168 | G-A | HET | ||
| SBS | Chr2 | 7603160 | C-T | Homo | ||
| SBS | Chr3 | 16701550 | C-A | Homo | STOP_GAINED | LOC_Os03g29350 |
| SBS | Chr3 | 24983914 | A-G | HET | ||
| SBS | Chr4 | 455266 | C-T | HET | ||
| SBS | Chr5 | 25080659 | G-T | Homo | ||
| SBS | Chr5 | 26491228 | T-A | Homo | ||
| SBS | Chr6 | 21210050 | T-C | HET | ||
| SBS | Chr6 | 21872569 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g37050 |
| SBS | Chr6 | 967171 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g02700 |
| SBS | Chr7 | 11026779 | A-T | HET | ||
| SBS | Chr7 | 1563266 | C-A | HET | ||
| SBS | Chr7 | 538473 | C-T | HET | ||
| SBS | Chr7 | 7905853 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g13790 |
| SBS | Chr8 | 17734995 | T-A | HET | ||
| SBS | Chr8 | 7416698 | C-T | HET | ||
| SBS | Chr8 | 8847429 | T-A | HET | ||
| SBS | Chr9 | 9200535 | G-C | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1480730 | 1480824 | 94 | |
| Deletion | Chr6 | 3339485 | 3339486 | 1 | |
| Deletion | Chr7 | 3658492 | 3658498 | 6 | |
| Deletion | Chr2 | 6607852 | 6607855 | 3 | |
| Deletion | Chr5 | 15453801 | 15453804 | 3 | |
| Deletion | Chr12 | 17730001 | 17774000 | 43999 | LOC_Os12g29710 |
| Deletion | Chr1 | 22443442 | 22443444 | 2 | |
| Deletion | Chr7 | 25512288 | 25512295 | 7 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 18762986 | 18762986 | 1 | LOC_Os11g31920 |
| Insertion | Chr5 | 20902716 | 20902719 | 4 | |
| Insertion | Chr5 | 9802418 | 9802418 | 1 | |
| Insertion | Chr6 | 13454925 | 13454927 | 3 | |
| Insertion | Chr6 | 23088753 | 23088753 | 1 | |
| Insertion | Chr7 | 16990876 | 16990890 | 15 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 33250750 | 33373727 | LOC_Os04g55840 |
| Inversion | Chr4 | 33348015 | 33373730 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 5979870 | Chr3 | 35071692 | |
| Translocation | Chr12 | 16207505 | Chr3 | 19315242 | 2 |
| Translocation | Chr6 | 20945316 | Chr1 | 4868813 | |
| Translocation | Chr6 | 23098685 | Chr3 | 25332478 | |
| Translocation | Chr6 | 23121676 | Chr3 | 25329605 | 2 |
| Translocation | Chr11 | 27311757 | Chr4 | 20036672 | |
| Translocation | Chr7 | 27758083 | Chr4 | 33252565 | |
| Translocation | Chr7 | 27758090 | Chr4 | 33250760 | 2 |
| Translocation | Chr6 | 29548187 | Chr2 | 31657765 |