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Mutant Information

Mutant Name	FN3539-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3539-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28704748	T-A	HET
SBS	Chr2	5703092	A-C	HET
SBS	Chr3	19980538	C-T	Homo
SBS	Chr4	2379701	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04940
SBS	Chr4	14334796	G-A	HET
SBS	Chr4	27051606	G-T	HET
SBS	Chr4	35088275	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g58980
SBS	Chr4	35088276	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g58980
SBS	Chr6	10376898	T-C	HET
SBS	Chr6	12392951	C-T	HET
SBS	Chr7	9603777	A-T	HET
SBS	Chr8	3301250	T-C	Homo
SBS	Chr10	5150704	G-A	HET
SBS	Chr10	9377938	A-G	HET
SBS	Chr12	15399105	C-T	HET
SBS	Chr12	16449322	G-T	HET

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	515251	515260	9
Deletion	Chr5	3474001	3538000	63999	9
Deletion	Chr12	12046496	12046497	1
Deletion	Chr4	12841304	12841315	11
Deletion	Chr4	13789310	13789313	3
Deletion	Chr12	23534944	23534945	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	15780243	15780244	2
Insertion	Chr1	42765371	42765371	1
Insertion	Chr2	9395950	9395950	1
Insertion	Chr2	32483158	32483158	1
Insertion	Chr4	2681953	2681953	1
Insertion	Chr4	25522327	25522327	1
Insertion	Chr7	7461825	7461825	1
Insertion	Chr12	5626711	5626711	1
Insertion	Chr12	11540047	11540047	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5000274	5623968
Inversion	Chr12	8498218	8684075
Inversion	Chr2	20875672	20877144

Translocations: 16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2295850	Chr4	15515482	2
Translocation	Chr10	5265517	Chr3	13387230
Translocation	Chr4	9051463	Chr2	13477793	2
Translocation	Chr5	10840705	Chr3	1059343	LOC_Os05g18720
Translocation	Chr5	10848707	Chr3	1059333	LOC_Os05g18730
Translocation	Chr12	11274423	Chr7	8261498	LOC_Os12g19381
Translocation	Chr9	15150164	Chr3	34698476
Translocation	Chr11	15952959	Chr7	11854568
Translocation	Chr12	16479077	Chr4	7081564
Translocation	Chr4	17228510	Chr3	26761877	2
Translocation	Chr11	17401407	Chr2	21467779	LOC_Os11g29940
Translocation	Chr9	19064980	Chr7	17464478
Translocation	Chr11	19806858	Chr1	935195
Translocation	Chr12	24881478	Chr5	14733946	2
Translocation	Chr11	28168665	Chr5	29598156	2
Translocation	Chr3	30923708	Chr1	22550939