Search Results
| Mutant Information |
|---|
| Mutant Name | FN354-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN354-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9840684 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g17120 |
| SBS | Chr1 | 17983547 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 31264418 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 33417794 | C-T | HET | INTRON | |
| SBS | Chr2 | 8603412 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 14394606 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 17879107 | A-C | HET | INTERGENIC | |
| SBS | Chr2 | 32035475 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 792414 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 5228222 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 5228223 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 6728279 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 7522578 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 23123639 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 23659694 | G-A | HET | INTRON | |
| SBS | Chr3 | 28043010 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 28804605 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 28717881 | C-T | HET | INTRON | |
| SBS | Chr5 | 23712049 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 27016406 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 995520 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 4483886 | A-G | HET | INTRON | |
| SBS | Chr6 | 25997931 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 8767750 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g15210 |
| SBS | Chr7 | 10665790 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 14742802 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g25700 |
| SBS | Chr8 | 12324413 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 17119030 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 26591309 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 22214509 | A-T | HET | INTRON | |
| SBS | Chr11 | 3975465 | G-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 11642319 | G-A | HOMO | STOP_GAINED | LOC_Os11g20150 |
| SBS | Chr11 | 15171541 | T-A | HET | INTRON | |
| SBS | Chr11 | 15285280 | C-A | HET | INTRON | |
| SBS | Chr11 | 16020005 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 22722070 | G-T | HET | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2328097 | 2328108 | 11 | |
| Deletion | Chr1 | 3564734 | 3564756 | 22 | |
| Deletion | Chr11 | 3831276 | 3831291 | 15 | LOC_Os11g07570 |
| Deletion | Chr3 | 5403131 | 5403137 | 6 | LOC_Os03g10600 |
| Deletion | Chr2 | 6308001 | 6349000 | 41000 | 8 |
| Deletion | Chr5 | 14404101 | 14404110 | 9 | LOC_Os05g24860 |
| Deletion | Chr4 | 15219036 | 15219037 | 1 | |
| Deletion | Chr6 | 16278910 | 16278912 | 2 | |
| Deletion | Chr6 | 17124468 | 17124475 | 7 | |
| Deletion | Chr5 | 18699197 | 18699200 | 3 | |
| Deletion | Chr1 | 20717393 | 20717394 | 1 | LOC_Os01g37120 |
| Deletion | Chr10 | 21379868 | 21379881 | 13 | |
| Deletion | Chr8 | 21454429 | 21454460 | 31 | LOC_Os08g34220 |
| Deletion | Chr6 | 27375357 | 27375368 | 11 | |
| Deletion | Chr2 | 29069416 | 29069442 | 26 | LOC_Os02g47570 |
| Deletion | Chr5 | 29417116 | 29417117 | 1 | LOC_Os05g51280 |
| Deletion | Chr3 | 34594279 | 34594282 | 3 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 2216295 | 2216296 | 2 | |
| Insertion | Chr4 | 13912052 | 13912054 | 3 | |
| Insertion | Chr3 | 14054766 | 14054766 | 1 | |
| Insertion | Chr7 | 17244955 | 17244966 | 12 | LOC_Os07g29360 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 1008970 | 15204215 | LOC_Os11g02920 |
| Inversion | Chr1 | 2035690 | 2268842 | LOC_Os01g04900 |
No Translocation