Search Results
| Mutant Information |
|---|
| Mutant Name | FN3543-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3543-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9181567 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g16220 |
| SBS | Chr1 | 15972308 | C-T | HET | ||
| SBS | Chr1 | 17744848 | G-T | HET | ||
| SBS | Chr1 | 28888550 | A-T | HET | ||
| SBS | Chr2 | 956008 | G-A | HET | ||
| SBS | Chr2 | 34589899 | C-T | HET | ||
| SBS | Chr3 | 24452353 | A-T | HET | STOP_GAINED | LOC_Os03g43720 |
| SBS | Chr3 | 25948304 | T-A | HET | ||
| SBS | Chr5 | 1948081 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g04290 |
| SBS | Chr5 | 1982909 | A-G | Homo | ||
| SBS | Chr5 | 9395810 | C-T | HET | ||
| SBS | Chr5 | 27203528 | C-T | HET | ||
| SBS | Chr6 | 4221553 | C-G | HET | ||
| SBS | Chr6 | 15515035 | G-A | HET | ||
| SBS | Chr7 | 23216607 | G-A | Homo | ||
| SBS | Chr7 | 28376193 | C-A | HET | ||
| SBS | Chr8 | 15875079 | T-C | Homo | ||
| SBS | Chr8 | 21119906 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g33760 |
| SBS | Chr9 | 11404409 | G-C | HET | ||
| SBS | Chr9 | 14307589 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g24050 |
| SBS | Chr9 | 15678278 | A-T | HET | ||
| SBS | Chr10 | 5331752 | G-A | HET | ||
| SBS | Chr10 | 6353155 | G-A | HET | ||
| SBS | Chr10 | 11673261 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g22520 |
| SBS | Chr10 | 13993097 | T-C | HET | ||
| SBS | Chr11 | 7477370 | G-T | HET | ||
| SBS | Chr11 | 14216154 | T-A | HET | ||
| SBS | Chr12 | 4908015 | T-C | HET | ||
| SBS | Chr12 | 7741020 | A-G | HET | ||
| SBS | Chr12 | 15071160 | G-A | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 306066 | 306067 | 1 | |
| Deletion | Chr2 | 1489766 | 1489768 | 2 | |
| Deletion | Chr4 | 7071480 | 7071481 | 1 | |
| Deletion | Chr3 | 14642228 | 14642249 | 21 | LOC_Os03g25590 |
| Deletion | Chr8 | 17058106 | 17058156 | 50 | |
| Deletion | Chr8 | 17061802 | 17061803 | 1 | LOC_Os08g28010 |
| Deletion | Chr8 | 25193353 | 25193354 | 1 | LOC_Os08g39800 |
| Deletion | Chr6 | 28991588 | 28991589 | 1 | |
| Deletion | Chr4 | 33406624 | 33406625 | 1 |
Insertions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 36687710 | 36687711 | 2 | |
| Insertion | Chr1 | 40421947 | 40421948 | 2 | |
| Insertion | Chr4 | 13304998 | 13304998 | 1 | LOC_Os04g23310 |
| Insertion | Chr6 | 12618735 | 12618736 | 2 | |
| Insertion | Chr2 | 360680 | 360680 | 1 | |
| Insertion | Chr4 | 2359536 | 2359537 | 2 | |
| Insertion | Chr4 | 10299853 | 10299854 | 2 | |
| Insertion | Chr5 | 24181664 | 24181666 | 3 | |
| Insertion | Chr7 | 24530941 | 24530941 | 1 | |
| Insertion | Chr11 | 18198569 | 18198569 | 1 | LOC_Os11g31220 |
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 1329961 | Chr6 | 10989295 | |
| Translocation | Chr6 | 8086619 | Chr4 | 18734238 | |
| Translocation | Chr7 | 9604616 | Chr3 | 25732270 | |
| Translocation | Chr8 | 10395362 | Chr1 | 31269249 | |
| Translocation | Chr8 | 14880001 | Chr3 | 23141739 |