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Mutant Information |
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Mutant Name | FN3545-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3545-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 28
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 35075581 | A-G | HET | ||
SBS | Chr2 | 11152182 | T-G | Homo | ||
SBS | Chr2 | 27102845 | T-C | Homo | ||
SBS | Chr2 | 28310381 | T-A | HET | ||
SBS | Chr2 | 33978303 | C-T | Homo | ||
SBS | Chr3 | 33253737 | T-C | HET | ||
SBS | Chr4 | 20608446 | G-A | HET | ||
SBS | Chr4 | 29054081 | G-T | HET | ||
SBS | Chr5 | 17897157 | A-T | HET | ||
SBS | Chr5 | 18643095 | G-T | HET | ||
SBS | Chr6 | 6234292 | G-A | HET | ||
SBS | Chr6 | 9165556 | A-T | HET | ||
SBS | Chr6 | 9165557 | C-T | HET | ||
SBS | Chr6 | 27594905 | G-A | Homo | ||
SBS | Chr6 | 31066709 | C-T | Homo | ||
SBS | Chr7 | 4467216 | T-A | HET | ||
SBS | Chr7 | 20701894 | C-T | HET | ||
SBS | Chr8 | 965209 | T-A | HET | ||
SBS | Chr8 | 8224603 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g13795 |
SBS | Chr8 | 11008375 | G-A | HET | ||
SBS | Chr9 | 13473926 | A-G | Homo | ||
SBS | Chr10 | 1799169 | A-G | HET | ||
SBS | Chr10 | 7636536 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g14040 |
SBS | Chr10 | 19027143 | C-T | HET | ||
SBS | Chr11 | 4215918 | G-A | Homo | ||
SBS | Chr11 | 23885029 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g40060 |
SBS | Chr12 | 4459388 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g08725 |
SBS | Chr12 | 21446433 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g35290 |
Deletions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 2861746 | 2861770 | 24 | LOC_Os08g05420 |
Deletion | Chr8 | 3555780 | 3555782 | 2 | |
Deletion | Chr10 | 3568923 | 3568929 | 6 | |
Deletion | Chr1 | 4473716 | 4473717 | 1 | |
Deletion | Chr1 | 10637989 | 10637991 | 2 | |
Deletion | Chr8 | 17066001 | 17276000 | 209999 | 29 |
Deletion | Chr8 | 17297001 | 17390000 | 92999 | 14 |
Deletion | Chr3 | 18551814 | 18551823 | 9 | |
Deletion | Chr2 | 21828803 | 21828804 | 1 | |
Deletion | Chr5 | 24701703 | 24701711 | 8 |
Insertions: 5
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr7 | 21706446 | 21724122 | 2 |
Translocations: 10
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 2633084 | Chr3 | 31359221 | |
Translocation | Chr9 | 2633088 | Chr3 | 31364480 | |
Translocation | Chr7 | 4604520 | Chr1 | 7703824 | |
Translocation | Chr12 | 7834036 | Chr9 | 18292553 | |
Translocation | Chr12 | 7834050 | Chr9 | 18291415 | 2 |
Translocation | Chr6 | 16040202 | Chr4 | 11855994 | |
Translocation | Chr7 | 17261705 | Chr3 | 18327007 | 2 |
Translocation | Chr4 | 17880850 | Chr1 | 36090932 | 2 |
Translocation | Chr8 | 18426033 | Chr2 | 18430726 | 2 |
Translocation | Chr7 | 22919405 | Chr5 | 14513387 | 2 |