Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35075581	A-G	HET
SBS	Chr10	1799169	A-G	HET
SBS	Chr10	19027143	C-T	HET
SBS	Chr10	7636536	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g14040
SBS	Chr11	23885029	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40060
SBS	Chr11	4215918	G-A	Homo
SBS	Chr12	21446433	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35290
SBS	Chr12	4459388	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g08725
SBS	Chr2	11152182	T-G	Homo
SBS	Chr2	27102845	T-C	Homo
SBS	Chr2	28310381	T-A	HET
SBS	Chr2	33978303	C-T	Homo
SBS	Chr3	33253737	T-C	HET
SBS	Chr4	20608446	G-A	HET
SBS	Chr4	29054081	G-T	HET
SBS	Chr5	17897157	A-T	HET
SBS	Chr5	18643095	G-T	HET
SBS	Chr6	27594905	G-A	Homo
SBS	Chr6	31066709	C-T	Homo
SBS	Chr6	6234292	G-A	HET
SBS	Chr6	9165556	A-T	HET
SBS	Chr6	9165557	C-T	HET
SBS	Chr7	20701894	C-T	HET
SBS	Chr7	4467216	T-A	HET
SBS	Chr8	11008375	G-A	HET
SBS	Chr8	8224603	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13795
SBS	Chr8	965209	T-A	HET
SBS	Chr9	13473926	A-G	Homo

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2861746	2861770	24	LOC_Os08g05420
Deletion	Chr8	3555780	3555782	2
Deletion	Chr10	3568923	3568929	6
Deletion	Chr1	4473716	4473717	1
Deletion	Chr1	10637989	10637991	2
Deletion	Chr8	17066001	17276000	209999	29
Deletion	Chr8	17297001	17390000	92999	14
Deletion	Chr3	18551814	18551823	9
Deletion	Chr2	21828803	21828804	1
Deletion	Chr5	24701703	24701711	8

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	22787867	22787870	4
Insertion	Chr3	9492816	9492822	7
Insertion	Chr5	10289552	10289552	1
Insertion	Chr7	232219	232219	1
Insertion	Chr7	23468619	23468619	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	21706446	21724119	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2633084	Chr3	31359221
Translocation	Chr9	2633088	Chr3	31364480
Translocation	Chr7	4604520	Chr1	7703824
Translocation	Chr12	7834036	Chr9	18292553
Translocation	Chr12	7834050	Chr9	18291415	2
Translocation	Chr6	16040202	Chr4	11855994
Translocation	Chr7	17261705	Chr3	18327007	2
Translocation	Chr4	17880850	Chr1	36090932	2
Translocation	Chr8	18426033	Chr2	18430726	2
Translocation	Chr7	22919405	Chr5	14513387	2

Main menu