Search Results
| Mutant Information |
|---|
| Mutant Name | FN3546-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3546-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15528530 | G-T | HET | ||
| SBS | Chr1 | 17258034 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g31550 |
| SBS | Chr1 | 31635479 | A-T | HET | ||
| SBS | Chr2 | 3727838 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g07260 |
| SBS | Chr2 | 34218647 | G-C | Homo | ||
| SBS | Chr3 | 17224578 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g30180 |
| SBS | Chr3 | 20561861 | T-C | Homo | ||
| SBS | Chr3 | 36098496 | A-G | HET | ||
| SBS | Chr3 | 36312502 | C-G | HET | ||
| SBS | Chr4 | 33966494 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g56970 |
| SBS | Chr6 | 4414471 | A-T | HET | ||
| SBS | Chr8 | 15683239 | C-T | Homo | ||
| SBS | Chr8 | 19272064 | C-T | Homo | ||
| SBS | Chr8 | 22942281 | A-C | Homo | ||
| SBS | Chr9 | 4864503 | A-C | Homo | ||
| SBS | Chr10 | 1628265 | A-G | HET | ||
| SBS | Chr10 | 14202213 | G-T | Homo | ||
| SBS | Chr10 | 19009757 | G-A | HET | ||
| SBS | Chr11 | 13463650 | C-A | Homo | ||
| SBS | Chr12 | 10215000 | G-A | HET | ||
| SBS | Chr12 | 21326472 | C-T | HET | ||
| SBS | Chr12 | 25107608 | G-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 4967840 | 4967846 | 6 | |
| Deletion | Chr2 | 7964001 | 8048000 | 83999 | 12 |
| Deletion | Chr12 | 8961684 | 8961687 | 3 | LOC_Os12g15680 |
| Deletion | Chr9 | 15936941 | 15936943 | 2 | |
| Deletion | Chr9 | 16761998 | 16762014 | 16 | |
| Deletion | Chr2 | 17325482 | 17325487 | 5 | |
| Deletion | Chr2 | 18758234 | 18758235 | 1 | |
| Deletion | Chr1 | 22329000 | 22329001 | 1 | |
| Deletion | Chr2 | 31070713 | 31070716 | 3 | |
| Deletion | Chr3 | 36141704 | 36141706 | 2 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 12698716 | 12698717 | 2 | |
| Insertion | Chr3 | 18120103 | 18120103 | 1 | |
| Insertion | Chr6 | 9968321 | 9968323 | 3 | |
| Insertion | Chr8 | 28426545 | 28426546 | 2 |
No Inversion
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 4258782 | Chr4 | 4257957 | |
| Translocation | Chr8 | 6303538 | Chr1 | 25605061 | |
| Translocation | Chr9 | 9765905 | Chr2 | 6850978 | |
| Translocation | Chr7 | 9894184 | Chr3 | 13495264 | 2 |
| Translocation | Chr11 | 13608124 | Chr5 | 15429066 | |
| Translocation | Chr9 | 18370188 | Chr8 | 2960408 | |
| Translocation | Chr3 | 23252552 | Chr2 | 9805470 | |
| Translocation | Chr11 | 24747900 | Chr3 | 27525984 | 2 |