Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3547-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3547-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1735402 | C-T | HET | ||
| SBS | Chr1 | 20881186 | G-T | Homo | ||
| SBS | Chr1 | 34590574 | C-T | HET | ||
| SBS | Chr1 | 42064024 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g72520 |
| SBS | Chr1 | 9908599 | A-T | Homo | ||
| SBS | Chr10 | 10109648 | G-A | HET | ||
| SBS | Chr10 | 12666985 | A-G | Homo | ||
| SBS | Chr10 | 17269984 | G-A | HET | ||
| SBS | Chr10 | 7067241 | C-T | HET | ||
| SBS | Chr11 | 11933705 | C-A | Homo | ||
| SBS | Chr11 | 18183530 | G-T | HET | ||
| SBS | Chr2 | 12824368 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g21590 |
| SBS | Chr3 | 16583928 | T-C | HET | ||
| SBS | Chr3 | 29819057 | C-T | HET | ||
| SBS | Chr3 | 34227106 | A-T | HET | ||
| SBS | Chr4 | 12632100 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g22300 |
| SBS | Chr4 | 21507473 | G-A | HET | ||
| SBS | Chr4 | 22721276 | A-T | HET | ||
| SBS | Chr5 | 1227340 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g03100 |
| SBS | Chr5 | 16121585 | T-A | HET | ||
| SBS | Chr5 | 16621022 | C-T | HET | ||
| SBS | Chr5 | 26071729 | G-A | HET | ||
| SBS | Chr5 | 29643954 | G-T | HET | ||
| SBS | Chr6 | 8565772 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g15110 |
| SBS | Chr7 | 11032501 | C-T | HET | ||
| SBS | Chr8 | 12182241 | C-T | HET | ||
| SBS | Chr8 | 24471337 | G-T | HET | ||
| SBS | Chr8 | 8983982 | C-A | HET | ||
| SBS | Chr9 | 10302251 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g16860 |
| SBS | Chr9 | 5496638 | C-T | HET | ||
| SBS | Chr9 | 8590471 | A-C | HET | ||
| SBS | Chr9 | 8638027 | C-T | HET | ||
| SBS | Chr9 | 9869150 | C-A | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2323713 | 2323716 | 3 | |
| Deletion | Chr6 | 4981001 | 5276000 | 294999 | 46 |
| Deletion | Chr11 | 6148960 | 6148965 | 5 | |
| Deletion | Chr1 | 7123521 | 7123527 | 6 | |
| Deletion | Chr12 | 7297640 | 7297641 | 1 | LOC_Os12g13120 |
| Deletion | Chr2 | 22703382 | 22703418 | 36 | LOC_Os02g37620 |
| Deletion | Chr8 | 24545001 | 24605000 | 59999 | 11 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 7961462 | 7961462 | 1 | |
| Insertion | Chr6 | 23048216 | 23048217 | 2 | |
| Insertion | Chr7 | 1279491 | 1279541 | 51 | |
| Insertion | Chr8 | 17372438 | 17372439 | 2 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 143973 | 800216 | 2 |
| Inversion | Chr3 | 143979 | 800218 | 2 |
| Inversion | Chr2 | 10231506 | 10612883 | LOC_Os02g17720 |
| Inversion | Chr12 | 18207985 | 18277592 | |
| Inversion | Chr8 | 20883576 | 21017112 | 2 |
| Inversion | Chr8 | 20883588 | 21017115 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 5795018 | Chr5 | 10239419 | |
| Translocation | Chr11 | 27838136 | Chr1 | 33304360 | 2 |