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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	976313	C-T	Homo
SBS	Chr1	9286581	C-T	HET
SBS	Chr1	9390090	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16540
SBS	Chr1	38444668	C-T	Homo
SBS	Chr2	25071152	A-T	HET
SBS	Chr2	26459228	T-G	HET
SBS	Chr2	31384295	G-A	HET
SBS	Chr3	13629128	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g24020
SBS	Chr3	35487158	C-T	HET
SBS	Chr4	5819742	T-A	Homo
SBS	Chr4	12503577	G-T	Homo
SBS	Chr4	31688824	G-T	Homo
SBS	Chr4	34427239	A-T	HET
SBS	Chr5	640020	T-C	HET
SBS	Chr5	15423692	C-T	HET
SBS	Chr5	18850878	G-A	Homo
SBS	Chr6	2845297	T-A	HET
SBS	Chr6	17031962	C-T	HET
SBS	Chr7	2528278	T-C	Homo
SBS	Chr7	8870715	G-A	HET
SBS	Chr7	16703009	G-A	HET
SBS	Chr8	9676455	G-A	HET
SBS	Chr8	11759762	T-A	HET
SBS	Chr8	13745654	T-A	HET
SBS	Chr8	25757630	A-G	HET
SBS	Chr9	1280281	A-T	HET
SBS	Chr9	10877594	C-T	Homo
SBS	Chr10	201691	G-A	HET
SBS	Chr11	1882668	A-T	HET
SBS	Chr11	10845900	C-T	HET
SBS	Chr11	11754731	G-A	HET
SBS	Chr11	19460851	G-A	HET
SBS	Chr11	20585034	A-T	HET
SBS	Chr11	28690231	T-C	HET
SBS	Chr12	13770102	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g24170

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	3350476	3350499	23
Deletion	Chr8	7148501	7148502	1	LOC_Os08g12130
Deletion	Chr3	8740156	8740164	8
Deletion	Chr3	8884103	8884115	12
Deletion	Chr1	14246775	14246795	20
Deletion	Chr2	14301205	14301221	16
Deletion	Chr4	17436802	17436803	1
Deletion	Chr8	18146954	18146955	1
Deletion	Chr4	27516001	27551000	34999	6
Deletion	Chr11	28943001	28966000	22999	6
Deletion	Chr11	28974001	29013000	38999	7

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3376048	3376049	2
Insertion	Chr4	6739168	6739168	1
Insertion	Chr5	5150992	5150993	2
Insertion	Chr5	14165380	14165383	4
Insertion	Chr7	4124573	4124574	2
Insertion	Chr4	480831	480831	1
Insertion	Chr4	481220	481222	3
Insertion	Chr7	13576897	13576897	1	LOC_Os07g23980
Insertion	Chr8	28366463	28366463	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6131757	6131903

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	539245	Chr7	23435000
Translocation	Chr11	1589518	Chr2	9833429
Translocation	Chr11	4926344	Chr7	6421522
Translocation	Chr4	5588400	Chr1	25576624
Translocation	Chr8	6527275	Chr4	1143403
Translocation	Chr12	8566889	Chr10	2106336
Translocation	Chr11	9764802	Chr3	24004209	LOC_Os11g17520
Translocation	Chr6	10284267	Chr4	4156865	2
Translocation	Chr10	12042227	Chr3	22607273	LOC_Os10g23090
Translocation	Chr4	12370203	Chr2	1489447
Translocation	Chr7	19449063	Chr1	12115016
Translocation	Chr12	22237317	Chr1	13535639
Translocation	Chr11	28940611	Chr1	11591220

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