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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1087506	G-T	Homo
SBS	Chr1	16674937	C-T	HET
SBS	Chr1	19497181	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g35220
SBS	Chr1	33779982	G-T	Homo
SBS	Chr2	12554356	G-A	HET
SBS	Chr2	22604125	G-T	Homo
SBS	Chr2	27087180	C-T	HET
SBS	Chr2	27088884	G-A	Homo
SBS	Chr3	4807409	A-T	HET
SBS	Chr3	5718593	C-T	HET
SBS	Chr4	11586799	A-C	HET
SBS	Chr4	11930788	G-A	HET
SBS	Chr4	32863993	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g55270
SBS	Chr5	11166585	C-T	HET
SBS	Chr5	13418615	A-T	HET
SBS	Chr5	23264000	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g39620
SBS	Chr5	26113715	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44930
SBS	Chr5	26113716	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44930
SBS	Chr5	26249467	A-C	HET
SBS	Chr5	28304653	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g49340
SBS	Chr6	1175596	C-T	Homo
SBS	Chr6	19446004	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g33390
SBS	Chr6	19446005	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g33390
SBS	Chr6	26238325	A-G	HET
SBS	Chr7	12658499	C-T	HET
SBS	Chr7	12658502	G-T	HET
SBS	Chr9	3021637	T-C	HET
SBS	Chr9	21550324	C-A	HET
SBS	Chr10	2427105	G-T	HET
SBS	Chr10	8991819	A-G	HET
SBS	Chr10	22022262	T-C	HET
SBS	Chr10	22436358	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g41660
SBS	Chr12	850037	A-T	HET
SBS	Chr12	9245366	A-T	HET
SBS	Chr12	9245367	T-G	HET
SBS	Chr12	9296418	G-C	HET
SBS	Chr12	16437560	T-A	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2722884	2722909	25
Deletion	Chr6	9792433	9792434	1	LOC_Os06g16890
Deletion	Chr1	11816832	11816833	1
Deletion	Chr7	12205475	12205476	1
Deletion	Chr1	16604566	16604568	2
Deletion	Chr10	17452449	17452471	22
Deletion	Chr3	17997613	17997617	4
Deletion	Chr9	19316495	19316496	1
Deletion	Chr6	19446016	19446017	1	LOC_Os06g33390
Deletion	Chr6	19617595	19617599	4
Deletion	Chr10	21940482	21940488	6
Deletion	Chr11	28939001	28965000	25999	7

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	29911017	29911018	2
Insertion	Chr3	4538298	4538303	6
Insertion	Chr6	9950703	9950705	3
Insertion	Chr7	19676771	19676771	1
Insertion	Chr9	18478348	18478348	1
Insertion	Chr10	1675732	1675768	37
Insertion	Chr12	11713495	11713495	1
Insertion	Chr12	17189074	17189074	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6367943	6838212	LOC_Os08g10810
Inversion	Chr4	26888775	26987734	LOC_Os04g45440
Inversion	Chr4	26888960	26987755	LOC_Os04g45440
Inversion	Chr6	28765860	29086214	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3679694	Chr8	1216395
Translocation	Chr7	3694488	Chr4	3213549
Translocation	Chr5	5212055	Chr1	26217213	2
Translocation	Chr9	13408900	Chr6	18884699	LOC_Os09g22150
Translocation	Chr8	14086287	Chr5	5212205	2
Translocation	Chr8	14996783	Chr1	41858429
Translocation	Chr7	17385329	Chr2	21197237
Translocation	Chr12	22799917	Chr4	18886094	LOC_Os12g37180
Translocation	Chr12	27344056	Chr11	28939296	2
Translocation	Chr4	34580586	Chr1	2756276	2

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