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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13754804	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g24400
SBS	Chr1	28508916	C-A	HOMO	INTERGENIC
SBS	Chr1	32200461	C-G	HET	INTERGENIC
SBS	Chr1	32200463	T-C	HET	INTERGENIC
SBS	Chr1	32200468	T-A	HET	INTERGENIC
SBS	Chr1	33328551	T-G	HET	INTERGENIC
SBS	Chr1	37601702	C-T	HOMO	INTERGENIC
SBS	Chr10	16131018	A-T	HET	INTERGENIC
SBS	Chr10	5248719	G-A	HET	INTERGENIC
SBS	Chr10	9646528	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g18940
SBS	Chr11	16162639	G-T	HOMO	INTERGENIC
SBS	Chr12	11760589	C-T	HOMO	INTERGENIC
SBS	Chr12	26727816	C-T	HET	INTERGENIC
SBS	Chr12	27242846	T-C	HET	INTERGENIC
SBS	Chr2	29898247	G-A	HOMO	INTERGENIC
SBS	Chr2	4859018	T-A	HET	UTR_5_PRIME
SBS	Chr3	26068768	C-T	HET	UTR_3_PRIME
SBS	Chr3	28367770	A-G	HET	INTERGENIC
SBS	Chr3	33127137	C-A	HOMO	INTERGENIC
SBS	Chr4	32722747	T-G	HOMO	INTERGENIC
SBS	Chr5	10607955	G-A	HET	INTERGENIC
SBS	Chr5	11473611	C-T	HET	INTERGENIC
SBS	Chr5	14067798	G-A	HET	INTERGENIC
SBS	Chr5	6519464	T-A	HET	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	22133013	T-G	HOMO	INTRON
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	6543280	T-C	HET	INTERGENIC
SBS	Chr8	21238215	C-T	HOMO	INTERGENIC
SBS	Chr8	28007087	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g44530
SBS	Chr8	4386237	T-A	HET	SYNONYMOUS_CODING
SBS	Chr9	14987220	A-G	HOMO	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1248512	1248513	1
Deletion	Chr1	5881726	5881727	1
Deletion	Chr2	6050472	6050477	5
Deletion	Chr12	7295573	7295577	4
Deletion	Chr5	8867282	8867283	1
Deletion	Chr11	10542059	10542060	1
Deletion	Chr7	13581191	13581199	8
Deletion	Chr7	13680143	13680189	46
Deletion	Chr10	14042349	14042350	1
Deletion	Chr5	17323563	17323566	3
Deletion	Chr1	18825900	18825905	5
Deletion	Chr3	19875920	19875999	79
Deletion	Chr3	20195004	20195005	1
Deletion	Chr7	23018949	23018960	11
Deletion	Chr5	23832036	23832066	30
Deletion	Chr4	27062832	27062861	29
Deletion	Chr3	27123139	27123141	2	LOC_Os03g47780
Deletion	Chr1	32199997	32200021	24
Deletion	Chr3	34519290	34519306	16
Deletion	Chr3	36205937	36205944	7
Deletion	Chr1	37349333	37349334	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	871553	871554	2
Insertion	Chr12	25900257	25900258	2
Insertion	Chr9	9286239	9286239	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	24678051	26057877	LOC_Os11g43200

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1172768	Chr2	4993309	LOC_Os02g09720
Translocation	Chr10	1172998	Chr2	4993298	LOC_Os02g09720

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