Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27174700	T-C	Homo
SBS	Chr1	32562734	C-T	HET
SBS	Chr1	40042878	C-T	HET
SBS	Chr10	19366576	C-T	Homo
SBS	Chr10	4352080	C-T	HET
SBS	Chr10	6171138	T-C	HET
SBS	Chr11	11288792	A-G	HET
SBS	Chr11	13275298	C-T	HET
SBS	Chr2	1096993	T-C	HET
SBS	Chr2	15149405	G-T	HET
SBS	Chr2	5299693	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g10130
SBS	Chr3	14761707	C-A	HET
SBS	Chr4	11834641	C-G	Homo
SBS	Chr4	5338729	C-A	HET
SBS	Chr6	16130851	G-T	HET
SBS	Chr7	26494690	T-G	Homo
SBS	Chr7	6455556	G-T	HET
SBS	Chr8	14200425	T-A	HET
SBS	Chr8	18858503	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30600
SBS	Chr8	18858504	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30600
SBS	Chr8	22701182	G-A	HET
SBS	Chr8	22930488	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g36380
SBS	Chr9	3198192	G-A	Homo
SBS	Chr9	3198193	A-T	Homo

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	4378407	4378409	2
Deletion	Chr8	7220970	7220973	3	LOC_Os08g12270
Deletion	Chr5	15399650	15399658	8
Deletion	Chr4	17306708	17306726	18	LOC_Os04g29190
Deletion	Chr1	22758554	22758562	8

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	5943189	5943194	6
Insertion	Chr4	8749036	8749036	1
Insertion	Chr7	3639162	3639170	9

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	13343701	13398884

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2564720	Chr3	25764349
Translocation	Chr9	4108822	Chr3	24004088
Translocation	Chr4	5215507	Chr1	1044499	LOC_Os04g09720
Translocation	Chr10	8060246	Chr5	16540436	2
Translocation	Chr12	9228988	Chr4	7080256
Translocation	Chr8	13663352	Chr5	22889155
Translocation	Chr6	15064490	Chr3	18517711
Translocation	Chr9	19008881	Chr4	11551033
Translocation	Chr11	23740972	Chr7	24849957	2
Translocation	Chr4	32897645	Chr1	22814514

Main menu