Search Results
| Mutant Information |
|---|
| Mutant Name | FN3551-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3551-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9249369 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g16310 |
| SBS | Chr1 | 13262649 | C-T | Homo | ||
| SBS | Chr1 | 24240214 | G-A | Homo | ||
| SBS | Chr1 | 30385635 | T-A | HET | ||
| SBS | Chr1 | 33083322 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g57250 |
| SBS | Chr3 | 35193462 | A-G | Homo | ||
| SBS | Chr3 | 35599337 | A-G | HET | ||
| SBS | Chr4 | 30732312 | C-T | HET | ||
| SBS | Chr4 | 30732313 | C-T | HET | ||
| SBS | Chr5 | 10189253 | A-G | HET | ||
| SBS | Chr5 | 14106140 | C-T | HET | ||
| SBS | Chr5 | 22525135 | C-T | HET | ||
| SBS | Chr5 | 24811987 | G-A | HET | ||
| SBS | Chr5 | 27219533 | C-T | HET | ||
| SBS | Chr7 | 5981161 | G-A | HET | ||
| SBS | Chr7 | 9463601 | T-G | HET | ||
| SBS | Chr7 | 14297591 | C-T | HET | ||
| SBS | Chr7 | 28418906 | G-A | Homo | ||
| SBS | Chr8 | 2150764 | T-A | Homo | ||
| SBS | Chr8 | 7592295 | T-C | HET | ||
| SBS | Chr8 | 8919389 | G-A | Homo | ||
| SBS | Chr8 | 16614930 | T-A | HET | ||
| SBS | Chr9 | 1952212 | A-T | HET | ||
| SBS | Chr9 | 2199818 | G-A | HET | ||
| SBS | Chr9 | 8394016 | G-C | HET | ||
| SBS | Chr9 | 12275003 | A-G | Homo | ||
| SBS | Chr10 | 1080963 | C-T | HET | ||
| SBS | Chr10 | 8471213 | G-T | HET | ||
| SBS | Chr10 | 13859068 | C-G | HET | ||
| SBS | Chr10 | 17478417 | A-T | Homo | ||
| SBS | Chr11 | 14372979 | G-A | Homo | ||
| SBS | Chr11 | 18838613 | G-A | Homo | ||
| SBS | Chr12 | 426311 | G-A | Homo | ||
| SBS | Chr12 | 982794 | G-A | HET | ||
| SBS | Chr12 | 1389815 | G-A | HET | ||
| SBS | Chr12 | 8446599 | G-A | Homo |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 120424 | 120425 | 1 | |
| Deletion | Chr1 | 839145 | 839146 | 1 | |
| Deletion | Chr2 | 2061382 | 2061383 | 1 | |
| Deletion | Chr12 | 3393385 | 3393393 | 8 | |
| Deletion | Chr4 | 9824713 | 9824714 | 1 | LOC_Os04g17880 |
| Deletion | Chr10 | 12177516 | 12177518 | 2 | |
| Deletion | Chr11 | 12739468 | 12739470 | 2 | |
| Deletion | Chr9 | 12787862 | 12787863 | 1 | |
| Deletion | Chr10 | 12973773 | 12973774 | 1 | LOC_Os10g25130 |
| Deletion | Chr11 | 14448309 | 14448310 | 1 | |
| Deletion | Chr7 | 18123696 | 18123846 | 150 | |
| Deletion | Chr6 | 21694061 | 21694062 | 1 | |
| Deletion | Chr12 | 22891706 | 22891711 | 5 | |
| Deletion | Chr11 | 24793001 | 24802000 | 8999 | |
| Deletion | Chr1 | 27176433 | 27176436 | 3 | LOC_Os01g47530 |
Insertions: 5
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 3817164 | Chr1 | 2752689 | 2 |
| Translocation | Chr11 | 13260212 | Chr4 | 10208139 | 2 |
| Translocation | Chr12 | 16446401 | Chr7 | 11777249 | LOC_Os12g27900 |
| Translocation | Chr2 | 22702345 | Chr1 | 11397326 | |
| Translocation | Chr8 | 25143113 | Chr4 | 3640812 |