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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6708650	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g12280
SBS	Chr1	20387283	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36720
SBS	Chr1	37492915	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g64600
SBS	Chr1	43239143	C-T	Homo
SBS	Chr2	14925417	G-A	HET
SBS	Chr3	3017360	G-A	Homo
SBS	Chr3	8170821	C-A	Homo
SBS	Chr3	18734999	T-A	HET
SBS	Chr3	18735000	T-A	HET
SBS	Chr3	29528926	G-T	HET
SBS	Chr3	33007664	T-C	Homo
SBS	Chr4	18101	G-A	HET
SBS	Chr4	12815753	G-A	HET
SBS	Chr4	14475998	T-G	HET
SBS	Chr4	24413511	C-T	HET
SBS	Chr5	2462207	G-T	Homo
SBS	Chr5	9553747	T-A	Homo
SBS	Chr5	12794485	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g22530
SBS	Chr5	16727989	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g28560
SBS	Chr6	23790454	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g39990
SBS	Chr7	11726007	C-T	HET
SBS	Chr8	18696509	C-T	HET
SBS	Chr8	24247599	T-A	Homo
SBS	Chr9	4533626	C-T	HET
SBS	Chr9	14601097	T-A	HET
SBS	Chr10	4750625	G-T	Homo
SBS	Chr10	4750627	A-T	Homo
SBS	Chr10	6251277	A-G	HET
SBS	Chr10	7247129	C-T	HET
SBS	Chr10	7247130	A-T	HET
SBS	Chr10	8998982	T-G	HET
SBS	Chr11	11729881	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g20300
SBS	Chr11	20482745	C-T	Homo
SBS	Chr11	25242115	G-A	HET
SBS	Chr12	8217216	C-A	HET
SBS	Chr12	16754654	G-T	HET
SBS	Chr12	17718853	G-C	HET
SBS	Chr12	18045142	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g30120
SBS	Chr12	20075228	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33170

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	96129	96135	6	LOC_Os03g01120
Deletion	Chr8	244794	244799	5
Deletion	Chr1	6279252	6279254	2
Deletion	Chr1	6301721	6301728	7
Deletion	Chr6	6372706	6372710	4
Deletion	Chr1	6622096	6622104	8
Deletion	Chr9	9419831	9419832	1
Deletion	Chr10	10127614	10127617	3	LOC_Os10g20170
Deletion	Chr9	16906459	16906460	1
Deletion	Chr12	17843001	17884000	40999	6
Deletion	Chr8	19050951	19050953	2
Deletion	Chr1	20201936	20201939	3
Deletion	Chr8	21896242	21896259	17
Deletion	Chr4	26255263	26255272	9	LOC_Os04g44330
Deletion	Chr1	42547289	42547290	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	19416435	19416436	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5644826	6252236	2
Inversion	Chr10	5644827	6253097	2
Inversion	Chr4	13278640	14215660	LOC_Os04g23270
Inversion	Chr4	13278641	14215658	LOC_Os04g23270
Inversion	Chr6	15409782	15410069	LOC_Os06g26320
Inversion	Chr12	17812355	18588970
Inversion	Chr3	31861300	31862083	LOC_Os03g55970

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr8	1207	Chr2	151
Translocation	Chr5	722618	Chr3	28717930
Translocation	Chr10	6377448	Chr5	12285016
Translocation	Chr10	6916665	Chr8	5929538
Translocation	Chr7	8806047	Chr3	14810748

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