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| Mutant Information |
|---|
| Mutant Name | FN3556-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3556-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19929427 | G-T | HET | ||
| SBS | Chr1 | 20436039 | G-A | HET | ||
| SBS | Chr1 | 21995578 | C-G | HET | ||
| SBS | Chr1 | 21995936 | C-T | HET | ||
| SBS | Chr11 | 23816458 | G-A | Homo | ||
| SBS | Chr11 | 27693814 | C-T | HET | ||
| SBS | Chr2 | 16046783 | C-T | HET | ||
| SBS | Chr3 | 20350790 | C-A | Homo | ||
| SBS | Chr3 | 28972129 | T-C | HET | ||
| SBS | Chr3 | 7925676 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g14600 |
| SBS | Chr4 | 15251205 | G-A | Homo | ||
| SBS | Chr5 | 16796241 | C-T | HET | ||
| SBS | Chr6 | 19963564 | C-T | HET | ||
| SBS | Chr6 | 24057132 | C-T | Homo | ||
| SBS | Chr7 | 26120689 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g43630 |
| SBS | Chr7 | 9912692 | A-G | HET | ||
| SBS | Chr8 | 19866119 | G-A | HET | ||
| SBS | Chr8 | 2491090 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g04880 |
| SBS | Chr8 | 6354866 | G-A | HET | ||
| SBS | Chr9 | 4280342 | A-C | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 562029 | 562030 | 1 | |
| Deletion | Chr12 | 703715 | 703717 | 2 | |
| Deletion | Chr3 | 4346862 | 4346864 | 2 | |
| Deletion | Chr1 | 8947933 | 8947943 | 10 | |
| Deletion | Chr2 | 10055290 | 10055292 | 2 | LOC_Os02g17470 |
| Deletion | Chr12 | 13675400 | 13675401 | 1 | |
| Deletion | Chr5 | 14700972 | 14700995 | 23 | LOC_Os05g25310 |
| Deletion | Chr10 | 17652870 | 17652872 | 2 | |
| Deletion | Chr12 | 18875665 | 18875667 | 2 | |
| Deletion | Chr3 | 20356053 | 20356054 | 1 | |
| Deletion | Chr8 | 21976139 | 21976140 | 1 | |
| Deletion | Chr1 | 23744144 | 23744149 | 5 | |
| Deletion | Chr8 | 25458512 | 25458514 | 2 | |
| Deletion | Chr6 | 25461805 | 25461811 | 6 | |
| Deletion | Chr8 | 27272721 | 27272723 | 2 | |
| Deletion | Chr11 | 28218055 | 28218391 | 336 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 14505752 | 14505754 | 3 | |
| Insertion | Chr9 | 1436033 | 1436034 | 2 | |
| Insertion | Chr9 | 2935867 | 2935867 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 12267160 | 12267501 | LOC_Os08g20420 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 6002429 | Chr7 | 29487982 | LOC_Os11g10890 |
| Translocation | Chr11 | 6006257 | Chr7 | 29487978 | |
| Translocation | Chr6 | 12210682 | Chr5 | 22082070 | 2 |
| Translocation | Chr6 | 12210686 | Chr5 | 22082312 | 2 |
| Translocation | Chr6 | 18060775 | Chr5 | 14283670 | 2 |