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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17483574	A-T	Homo
SBS	Chr10	10789172	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g21190
SBS	Chr10	15597715	A-G	HET
SBS	Chr10	19214922	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g35950
SBS	Chr11	19950299	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34090
SBS	Chr11	19950300	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34090
SBS	Chr11	20768134	C-T	HET
SBS	Chr12	19809794	T-C	Homo
SBS	Chr12	2435948	G-T	HET
SBS	Chr12	4610917	C-T	HET
SBS	Chr12	9057908	G-T	HET
SBS	Chr2	1158391	G-A	HET
SBS	Chr2	1584881	A-G	HET
SBS	Chr2	21208892	G-T	HET
SBS	Chr3	32665421	C-G	Homo
SBS	Chr3	33400815	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g58640
SBS	Chr4	1553878	C-T	Homo
SBS	Chr4	30299053	T-G	Homo
SBS	Chr4	8278449	G-A	HET
SBS	Chr5	10815152	A-G	Homo
SBS	Chr5	29609923	C-T	Homo
SBS	Chr5	3901110	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g07340
SBS	Chr5	3901111	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g07340
SBS	Chr5	6573588	A-G	Homo
SBS	Chr7	16374441	A-C	Homo
SBS	Chr7	17843911	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30200
SBS	Chr7	22722592	C-T	HET
SBS	Chr7	22722593	C-G	HET
SBS	Chr8	22564335	G-T	Homo
SBS	Chr8	22564339	T-A	Homo
SBS	Chr9	10175955	A-T	Homo
SBS	Chr9	12145115	G-A	Homo
SBS	Chr9	13571677	A-T	HET	STOP_GAINED	LOC_Os09g22500
SBS	Chr9	13571678	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g22500

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1071926	1071944	18	LOC_Os02g02810
Deletion	Chr4	2797684	2797685	1
Deletion	Chr5	3902086	3902107	21	LOC_Os05g07340
Deletion	Chr5	6559322	6559328	6
Deletion	Chr5	8370184	8370188	4
Deletion	Chr11	9601880	9601883	3	LOC_Os11g17230
Deletion	Chr4	10158058	10158064	6
Deletion	Chr5	10811514	10811523	9
Deletion	Chr4	15497122	15497126	4
Deletion	Chr11	16809509	16809572	63
Deletion	Chr6	20085974	20085977	3	LOC_Os06g34520
Deletion	Chr1	23074181	23074189	8
Deletion	Chr5	23818001	23856000	37999	8
Deletion	Chr3	25751673	25751678	5
Deletion	Chr3	26515712	26515714	2
Deletion	Chr5	27100628	27100635	7
Deletion	Chr5	27106817	27106825	8
Deletion	Chr5	29614631	29614636	5	LOC_Os05g51630
Deletion	Chr6	29619047	29619048	1	LOC_Os06g48920
Deletion	Chr4	32625102	32625109	7
Deletion	Chr1	34053453	34053497	44	LOC_Os01g58920
Deletion	Chr1	37747001	37781000	33999	6

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	35733431	35733432	2
Insertion	Chr10	2580103	2580103	1
Insertion	Chr11	7153900	7153900	1
Insertion	Chr12	14492835	14492836	2
Insertion	Chr5	12775513	12775513	1
Insertion	Chr7	174804	174804	1
Insertion	Chr7	28525650	28525651	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	19522241	19644478
Inversion	Chr11	19644485	19701682	2
Inversion	Chr6	22483086	22521343
Inversion	Chr5	23855091	23921060	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2163974	Chr1	37409969

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