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Mutant Information

Mutant Name	FN3560-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3560-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18451793	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g33520
SBS	Chr1	21466020	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g38260
SBS	Chr1	31009620	G-A	Homo
SBS	Chr1	42115731	C-T	HET
SBS	Chr10	12824281	G-A	Homo
SBS	Chr11	4481315	A-G	HET
SBS	Chr12	11954840	T-A	HET
SBS	Chr12	8464258	G-T	HET
SBS	Chr2	25903205	G-A	Homo
SBS	Chr3	30128133	G-A	Homo
SBS	Chr3	9843312	G-T	HET
SBS	Chr4	16118584	A-G	Homo
SBS	Chr4	17058719	A-G	Homo
SBS	Chr5	10001035	C-T	HET
SBS	Chr8	25082174	G-T	HET
SBS	Chr8	25949454	C-T	HET
SBS	Chr8	27986354	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44500
SBS	Chr9	7820563	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g13510

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	5858836	5858838	2
Deletion	Chr9	7038765	7038766	1
Deletion	Chr1	7101313	7101317	4	LOC_Os01g12830
Deletion	Chr5	8258212	8258222	10
Deletion	Chr3	11429212	11429222	10	LOC_Os03g20230
Deletion	Chr7	11916451	11916456	5
Deletion	Chr6	13221727	13221736	9
Deletion	Chr11	14183001	14243000	59999	11
Deletion	Chr11	14592669	14592670	1
Deletion	Chr5	17791092	17791116	24	LOC_Os05g30720
Deletion	Chr8	21926661	21926662	1	LOC_Os08g34850
Deletion	Chr11	24916116	24916117	1
Deletion	Chr3	31926392	31926399	7
Deletion	Chr2	33974580	33974583	3
Deletion	Chr1	41278767	41278772	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	8577738	8577738	1
Insertion	Chr2	34850036	34850037	2
Insertion	Chr3	28389567	28389570	4
Insertion	Chr5	5661449	5661449	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2226953	2602336	2
Inversion	Chr8	8430266	8430531

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	18250460	Chr4	2918114	2