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| Mutant Information |
|---|
| Mutant Name | FN3565-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3565-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30467641 | T-C | Homo | ||
| SBS | Chr1 | 36249357 | C-T | HET | ||
| SBS | Chr1 | 37165402 | C-T | HET | ||
| SBS | Chr10 | 12616949 | A-T | HET | ||
| SBS | Chr10 | 1973532 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os10g04230 |
| SBS | Chr10 | 7457759 | G-A | HET | ||
| SBS | Chr11 | 19949939 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g34090 |
| SBS | Chr12 | 5437406 | G-T | Homo | ||
| SBS | Chr2 | 14820177 | A-G | Homo | ||
| SBS | Chr3 | 10308797 | T-A | HET | ||
| SBS | Chr3 | 18991455 | T-A | HET | ||
| SBS | Chr3 | 23707534 | G-A | HET | ||
| SBS | Chr3 | 33575274 | T-G | Homo | ||
| SBS | Chr3 | 34480905 | C-T | HET | ||
| SBS | Chr5 | 10316301 | A-G | HET | ||
| SBS | Chr5 | 12127710 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g20680 |
| SBS | Chr5 | 1262773 | C-T | HET | ||
| SBS | Chr5 | 13047214 | C-T | HET | ||
| SBS | Chr5 | 24136495 | C-A | HET | ||
| SBS | Chr6 | 20555727 | A-T | Homo | ||
| SBS | Chr7 | 12431838 | A-C | HET | ||
| SBS | Chr8 | 18149850 | G-A | HET | ||
| SBS | Chr8 | 18391490 | G-C | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 129022 | 129023 | 1 | |
| Deletion | Chr5 | 2621925 | 2621935 | 10 | |
| Deletion | Chr6 | 2662572 | 2662573 | 1 | LOC_Os06g05830 |
| Deletion | Chr1 | 5048573 | 5048578 | 5 | |
| Deletion | Chr12 | 5437438 | 5437444 | 6 | |
| Deletion | Chr6 | 12281624 | 12281627 | 3 | |
| Deletion | Chr3 | 12340166 | 12340177 | 11 | |
| Deletion | Chr4 | 13738727 | 13738733 | 6 | |
| Deletion | Chr8 | 16264186 | 16264192 | 6 | |
| Deletion | Chr10 | 16986734 | 16986735 | 1 | |
| Deletion | Chr8 | 24408054 | 24408057 | 3 | |
| Deletion | Chr7 | 28279561 | 28279566 | 5 | LOC_Os07g47300 |
| Deletion | Chr7 | 28458001 | 28684000 | 225999 | 42 |
| Deletion | Chr2 | 32161088 | 32161091 | 3 | |
| Deletion | Chr2 | 32491271 | 32491272 | 1 | LOC_Os02g53100 |
Insertions: 5
No Inversion
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 84818 | Chr4 | 7066516 | 2 |
| Translocation | Chr7 | 1408002 | Chr4 | 8158712 | 2 |
| Translocation | Chr7 | 9758638 | Chr4 | 3712926 | |
| Translocation | Chr7 | 9977855 | Chr2 | 19708342 | LOC_Os07g16960 |
| Translocation | Chr5 | 14575787 | Chr2 | 8032374 | |
| Translocation | Chr4 | 15897471 | Chr1 | 42134732 | 2 |