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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	12762266	T-A	HET
SBS	Chr3	20650887	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g37260
SBS	Chr3	22197217	G-A	HET
SBS	Chr3	22197218	C-A	HET
SBS	Chr3	34819371	A-T	Homo
SBS	Chr4	1538725	C-T	Homo
SBS	Chr5	5113763	A-T	HET
SBS	Chr5	12135544	C-T	HET
SBS	Chr6	1141878	A-T	HET
SBS	Chr6	2122020	C-T	HET
SBS	Chr6	4235428	C-G	HET
SBS	Chr6	11511637	G-A	Homo
SBS	Chr7	6005862	T-C	Homo
SBS	Chr7	14026266	C-T	Homo
SBS	Chr7	18613429	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g31420
SBS	Chr7	26220038	G-C	Homo
SBS	Chr8	26241191	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g41540
SBS	Chr8	26241196	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g41540
SBS	Chr8	26251481	A-T	HET
SBS	Chr9	21871862	C-G	HET
SBS	Chr10	5486005	T-A	Homo
SBS	Chr10	10620143	A-T	HET
SBS	Chr10	12637212	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24620
SBS	Chr11	10492052	C-T	HET
SBS	Chr11	28739085	T-G	Homo
SBS	Chr12	10274090	A-G	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1335146	1335150	4
Deletion	Chr7	1526901	1526941	40
Deletion	Chr9	3409287	3409289	2
Deletion	Chr4	4993028	4993143	115
Deletion	Chr10	10534461	10534476	15
Deletion	Chr3	10573003	10573007	4	LOC_Os03g18870
Deletion	Chr6	15722001	15733000	10999	2
Deletion	Chr12	17891911	17891917	6
Deletion	Chr7	18618492	18618496	4	LOC_Os07g31430
Deletion	Chr10	21044300	21044302	2
Deletion	Chr3	23350324	23350329	5
Deletion	Chr11	23712360	23712362	2
Deletion	Chr7	23729150	23729153	3
Deletion	Chr5	24224125	24224137	12	LOC_Os05g41350
Deletion	Chr4	33914390	33914420	30
Deletion	Chr4	35211690	35211697	7
Deletion	Chr1	40372576	40372577	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	28197377	28197377	1
Insertion	Chr3	32839658	32839658	1
Insertion	Chr5	2697098	2697099	2

Inversions: 16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2558163	2739096	2
Inversion	Chr12	5565905	5707377	2
Inversion	Chr12	5565926	5707384	2
Inversion	Chr10	7337266	7389315	2
Inversion	Chr10	7337274	7389312	2
Inversion	Chr8	12661588	12661985	LOC_Os08g21210
Inversion	Chr6	15588204	15732784	LOC_Os06g27530
Inversion	Chr6	16599943	16723119	2
Inversion	Chr7	17945961	18635845	2
Inversion	Chr7	17945980	18635844	2
Inversion	Chr6	21290503	21298762
Inversion	Chr6	21290511	21298779
Inversion	Chr5	23595734	23749681	2
Inversion	Chr5	23595738	23749684	2
Inversion	Chr1	37913274	38040673
Inversion	Chr1	37913286	38040682

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	2781287	Chr6	15588193	2
Translocation	Chr7	2781459	Chr6	15584484
Translocation	Chr7	3115657	Chr5	24535074	2
Translocation	Chr8	6075137	Chr5	8208592	2
Translocation	Chr7	6386905	Chr6	22634306
Translocation	Chr11	16760293	Chr1	5706421	2
Translocation	Chr11	23446234	Chr2	671709

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