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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13739207	C-T	HET
SBS	Chr1	13985196	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g24830
SBS	Chr1	29504352	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51300
SBS	Chr1	34423037	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g59530
SBS	Chr1	34423038	C-T	HET
SBS	Chr1	34496373	C-T	HET
SBS	Chr10	15468601	C-G	Homo
SBS	Chr10	789324	G-A	HET
SBS	Chr11	10323665	T-C	Homo
SBS	Chr12	22057267	A-T	HET
SBS	Chr12	23729760	G-C	HET
SBS	Chr12	27144596	G-A	HET
SBS	Chr2	13026189	C-T	HET
SBS	Chr2	20710484	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34550
SBS	Chr2	27830074	T-C	HET
SBS	Chr2	6203062	T-A	HET
SBS	Chr2	8122160	C-T	HET
SBS	Chr3	13403001	C-A	HET
SBS	Chr3	15248569	C-T	HET
SBS	Chr3	22429560	C-G	HET
SBS	Chr3	24374368	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43610
SBS	Chr3	26133635	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46220
SBS	Chr3	6506541	G-A	HET
SBS	Chr4	8984613	T-C	HET
SBS	Chr5	14171272	G-A	Homo
SBS	Chr5	23828191	T-C	HET
SBS	Chr6	17312971	T-G	HET
SBS	Chr6	981014	A-G	Homo
SBS	Chr8	11360181	G-A	HET
SBS	Chr8	19357195	G-T	HET
SBS	Chr9	13675172	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23120
SBS	Chr9	14614941	T-C	HET
SBS	Chr9	22305872	T-C	HET

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	687111	687119	8	LOC_Os04g02110
Deletion	Chr12	841765	841766	1
Deletion	Chr6	3135816	3135817	1	LOC_Os06g06680
Deletion	Chr9	3568335	3568350	15
Deletion	Chr3	4543304	4543306	2
Deletion	Chr2	4851001	4913000	61999	10
Deletion	Chr1	13184001	13206000	21999	6
Deletion	Chr7	14398751	14398757	6	LOC_Os07g25200
Deletion	Chr9	16663284	16663286	2
Deletion	Chr9	17023001	17044000	20999	2
Deletion	Chr3	17454981	17454982	1	LOC_Os03g30580
Deletion	Chr2	18520215	18520217	2
Deletion	Chr7	18925873	18925888	15
Deletion	Chr11	20344511	20344512	1
Deletion	Chr9	22579549	22579550	1
Deletion	Chr8	24046231	24046235	4
Deletion	Chr5	24605420	24605425	5
Deletion	Chr11	26728041	26728043	2
Deletion	Chr8	28029795	28029799	4	LOC_Os08g44570
Deletion	Chr1	28775665	28775666	1
Deletion	Chr5	28791866	28791870	4
Deletion	Chr2	29172897	29172898	1
Deletion	Chr1	33464001	33498000	33999	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	32609313	32609323	11
Insertion	Chr10	4472888	4472889	2
Insertion	Chr12	19010696	19010699	4
Insertion	Chr7	28173836	28173836	1
Insertion	Chr8	22509329	22509329	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	535663	1147572
Inversion	Chr11	535667	1147574
Inversion	Chr3	6764082	7576760	2
Inversion	Chr3	6764084	7576762	2
Inversion	Chr10	16321217	16321357
Inversion	Chr8	25007486	25007838

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	18715857	Chr1	2890614	LOC_Os07g31530

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