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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	1114978	G-A	Homo
SBS	Chr10	20914672	T-A	HET
SBS	Chr11	13794285	C-T	Homo
SBS	Chr11	24965488	A-G	Homo
SBS	Chr12	22013071	A-C	Homo
SBS	Chr2	29436717	C-A	HET
SBS	Chr2	4782674	T-A	HET
SBS	Chr3	14288708	A-G	Homo
SBS	Chr3	14689769	G-A	Homo
SBS	Chr4	2185886	G-A	HET
SBS	Chr4	23430193	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39370
SBS	Chr4	26826213	A-G	HET
SBS	Chr4	4600385	C-T	Homo
SBS	Chr5	14869972	T-A	Homo
SBS	Chr5	25410734	A-G	Homo
SBS	Chr6	11855830	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20590
SBS	Chr6	24949430	T-A	Homo
SBS	Chr6	27096844	C-T	Homo
SBS	Chr7	4642834	G-A	HET
SBS	Chr7	4642835	G-A	HET
SBS	Chr7	8473107	A-G	HET
SBS	Chr8	21010455	A-C	HET
SBS	Chr8	21228197	T-C	HET
SBS	Chr9	5420113	G-C	HET
SBS	Chr9	6661976	A-G	HET
SBS	Chr9	8142730	C-A	Homo

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1132283	1132292	9
Deletion	Chr2	1282653	1282659	6
Deletion	Chr3	2018498	2018505	7
Deletion	Chr1	2646308	2646452	144
Deletion	Chr7	4429433	4429436	3
Deletion	Chr1	6514050	6514062	12	LOC_Os01g11952
Deletion	Chr7	8092001	8323000	230999	39
Deletion	Chr12	8522527	8522528	1
Deletion	Chr7	9800188	9800207	19	LOC_Os07g16710
Deletion	Chr10	10949769	10949781	12
Deletion	Chr4	10953070	10953072	2
Deletion	Chr11	12189303	12189447	144
Deletion	Chr2	13089516	13089533	17
Deletion	Chr12	13397240	13397249	9
Deletion	Chr1	20208763	20208765	2
Deletion	Chr9	20692448	20692467	19
Deletion	Chr9	22708930	22708938	8	LOC_Os09g39560
Deletion	Chr8	23369602	23369612	10	LOC_Os08g36940
Deletion	Chr8	23800650	23800651	1
Deletion	Chr4	24439961	24439967	6
Deletion	Chr12	24876968	24876975	7	LOC_Os12g40190
Deletion	Chr12	26825569	26825570	1
Deletion	Chr8	28223708	28223712	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	41677799	41677805	7
Insertion	Chr10	16014488	16014489	2
Insertion	Chr11	27611488	27611488	1
Insertion	Chr2	4229836	4229837	2
Insertion	Chr9	13258549	13258549	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11098314	11257603	LOC_Os09g18110
Inversion	Chr9	11098322	11257616	LOC_Os09g18110
Inversion	Chr3	12759969	12834342	2
Inversion	Chr3	12759975	12834351	2

Translocations: 19

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	112075	Chr4	34753366	2
Translocation	Chr4	3844939	Chr3	13382505
Translocation	Chr5	5212063	Chr1	19483686	2
Translocation	Chr6	8929257	Chr3	6178745	LOC_Os06g15740
Translocation	Chr11	8942993	Chr3	17955948	LOC_Os11g16250
Translocation	Chr11	10564391	Chr2	9967003
Translocation	Chr9	11098311	Chr2	11460819	2
Translocation	Chr9	11257600	Chr2	11460929	2
Translocation	Chr4	12144040	Chr2	8032110
Translocation	Chr12	12883599	Chr10	4480981	2
Translocation	Chr12	15670185	Chr1	2952829	2
Translocation	Chr12	15670877	Chr1	7167539	LOC_Os12g26740
Translocation	Chr12	15671376	Chr1	7167535	LOC_Os12g26740
Translocation	Chr7	17297767	Chr1	38721288
Translocation	Chr11	18032334	Chr8	14224266	2
Translocation	Chr12	18623355	Chr3	34394506	2
Translocation	Chr11	26002459	Chr6	20608561
Translocation	Chr6	26890271	Chr2	21623471
Translocation	Chr11	27843647	Chr6	22526009	2

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